Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABWV75_RS10825 Genome accession   NZ_AP031487
Coordinates   2158871..2160244 (-) Length   457 a.a.
NCBI ID   WP_353318077.1    Uniprot ID   -
Organism   Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2153871..2165244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWV75_RS10810 (SKB0068_21050) cysE 2155030..2155659 (-) 630 WP_172457920.1 serine O-acetyltransferase -
  ABWV75_RS10815 (SKB0068_21060) gltX 2156043..2157497 (-) 1455 WP_133945500.1 glutamate--tRNA ligase -
  ABWV75_RS10820 (SKB0068_21070) - 2157778..2158848 (-) 1071 WP_002488403.1 PIN/TRAM domain-containing protein -
  ABWV75_RS10825 (SKB0068_21080) radA 2158871..2160244 (-) 1374 WP_353318077.1 DNA repair protein RadA Machinery gene
  ABWV75_RS10830 (SKB0068_21090) - 2160376..2162847 (-) 2472 WP_049418287.1 ATP-dependent Clp protease ATP-binding subunit -
  ABWV75_RS10835 (SKB0068_21100) - 2162863..2163873 (-) 1011 WP_162837080.1 protein arginine kinase -
  ABWV75_RS10840 (SKB0068_21110) - 2163863..2164426 (-) 564 WP_115345300.1 UvrB/UvrC motif-containing protein -
  ABWV75_RS10845 (SKB0068_21120) - 2164458..2164919 (-) 462 WP_002449017.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50366.76 Da        Isoelectric Point: 7.4587

>NTDB_id=109758 ABWV75_RS10825 WP_353318077.1 2158871..2160244(-) (radA) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKTSNPKHGVKTKETQAKVQKLNSIKHEATPRVQTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEVIHQTVE
QERPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQSLVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPEGVQVVGVTTVHDALKYAFSNRSS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=109758 ABWV75_RS10825 WP_353318077.1 2158871..2160244(-) (radA) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
TTGGCCAAGAAAAAAGTAATTTTCGAATGTATGGCTTGTGGATATCAGTCTCCTAAATGGATGGGAAAATGTCCAAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTATTGAAAAGACTTCCAATCCAAAACATGGTGTAAAGACAAAAGAGACACAAG
CAAAAGTACAGAAATTAAATAGTATTAAGCATGAGGCAACACCAAGAGTTCAAACGGACTCTAAAGAATTTAATCGTGTA
CTTGGTGGCGGAATTGTTAGTGGATCACTCGTACTGATTGGCGGCGACCCAGGTATTGGGAAATCTACATTGTTATTACA
GATTTGTGCATCGTTATCACAGAAACTTAATGTACTTTATATCACGGGTGAAGAATCACTAAATCAAACGAAATTGCGTG
CAGATCGTCTAGAGGAAGACTCTAGTAATTTAAATGTACTAGCTGAAACAGATTTAGAAGTTATTCATCAAACCGTGGAA
CAAGAGCGCCCAGATATACTTGTTGTCGATTCAATTCAAACGATTTATCATCCTGAGATTAGTTCTGCACCTGGCTCAGT
ATCACAAGTTCGAGAAAGTACACAAAGTTTAATGAATATTGCAAAACAAATGAATATCGCAACTTTTATAGTAGGTCACG
TAACAAAAGAAGGACAAATTGCTGGTCCAAGACTATTAGAACATATGGTAGATACAGTTTTATACTTCGAAGGTGATGAA
CACCATGCTTATCGAATTCTAAGAGCAGTTAAAAATCGTTTTGGTTCAACGAATGAAATGGGTATTTTTGAAATGAAACA
AAGTGGTTTGAAAGGTGTACAAAATCCTTCAGAAATGTTTTTAGAAGAACGCTCTACAAATGTTCCAGGATCAACAATTG
TGGCTACTATGGAAGGCACACGACCACTATTGATTGAGGTGCAATCTCTAGTAACACCTACTACATTTAATAATCCAAGA
CGAATGGCCACAGGCATCGACCACAATCGACTTAGTTTGCTTATGGCTGTTTTAGAGAAAAAAGAAAATTATCTTTTACA
ACAACAAGATGCTTACATTAAAGTAGCGGGTGGAGTGAGACTGACTGAACCGGCTGTAGATTTAAGTATTATTGTAGCGA
CTGCTTCAAGTTTTAAAGATAAAGCTGTAGATGGTTTGGATTGTTATATTGGTGAAGTGGGATTAACTGGTGAAGTAAGA
CGAGTATCGCGTATTGAGCAACGTGTACAAGAAGCGGCAAAACTAGGATTTAAGAGAGTGATTATTCCCAAAACGAATAT
AGGTGGATGGACATTCCCAGAAGGTGTTCAGGTCGTTGGCGTGACAACGGTACATGATGCCTTAAAATATGCGTTTAGTA
ATCGCTCATCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(355-426)

AAA domain (AAA_25)

(76-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

99.781

0.652
  radA Streptococcus pneumoniae Rx1

59.382

99.125

0.589
  radA Streptococcus pneumoniae D39

59.382

99.125

0.589
  radA Streptococcus pneumoniae R6

59.382

99.125

0.589
  radA Streptococcus pneumoniae TIGR4

59.382

99.125

0.589
  radA Streptococcus mitis NCTC 12261

59.382

99.125

0.589
  radA Streptococcus mitis SK321

59.382

99.125

0.589

Multiple sequence alignment