Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACM3FK_RS05985 Genome accession   NZ_CP180694
Coordinates   1177991..1178620 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CUPS04     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1172991..1183620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM3FK_RS05970 (ACM3FK_05970) helD 1173233..1175287 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACM3FK_RS05975 (ACM3FK_05975) yccF 1175410..1175856 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACM3FK_RS05980 (ACM3FK_05980) yccS 1175866..1178028 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ACM3FK_RS05985 (ACM3FK_05985) sxy/tfoX 1177991..1178620 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACM3FK_RS05990 (ACM3FK_05990) sulA 1178839..1179348 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  ACM3FK_RS05995 (ACM3FK_05995) ompA 1179705..1180745 (+) 1041 WP_000750416.1 porin OmpA -
  ACM3FK_RS06000 (ACM3FK_06000) matP 1180821..1181273 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACM3FK_RS06005 (ACM3FK_06005) ycbZ 1181459..1183219 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1097514 ACM3FK_RS05985 WP_000839153.1 1177991..1178620(-) (sxy/tfoX) [Escherichia coli strain CUPS04]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1097514 ACM3FK_RS05985 WP_000839153.1 1177991..1178620(-) (sxy/tfoX) [Escherichia coli strain CUPS04]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment