Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACM0O0_RS17910 Genome accession   NZ_CP180689
Coordinates   3822425..3823579 (+) Length   384 a.a.
NCBI ID   WP_416040783.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3817425..3828579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS17885 - 3817574..3818788 (+) 1215 WP_032038569.1 oxygenase MpaB family protein -
  ACM0O0_RS17890 - 3818856..3819062 (-) 207 WP_031947118.1 hypothetical protein -
  ACM0O0_RS17895 - 3819116..3821230 (-) 2115 WP_416040782.1 TonB-dependent copper receptor -
  ACM0O0_RS17900 - 3821303..3821728 (-) 426 WP_016144060.1 DUF2946 family protein -
  ACM0O0_RS17905 def 3821772..3822302 (-) 531 WP_016144059.1 peptide deformylase -
  ACM0O0_RS17910 tsaP 3822425..3823579 (+) 1155 WP_416040783.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACM0O0_RS17915 dprA 3823600..3824733 (+) 1134 WP_416040784.1 DNA-processing protein DprA Machinery gene
  ACM0O0_RS17920 - 3824785..3825354 (+) 570 WP_016144056.1 L-threonylcarbamoyladenylate synthase -
  ACM0O0_RS17925 - 3825746..3826666 (-) 921 WP_079748210.1 DMT family transporter -
  ACM0O0_RS17930 - 3826771..3827424 (-) 654 WP_416041597.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42534.39 Da        Isoelectric Point: 7.9816

>NTDB_id=1097485 ACM0O0_RS17910 WP_416040783.1 3822425..3823579(+) (tsaP) [Acinetobacter lactucae isolate nanjing]
MKKVFDGMVQFHALGIKKHLLAFALFTGVAFGTVAEGYAASPNHNPPSLKSNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPADAIEHTPYVVGTADQRVLAAKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVNATQVTDGGKIIRVMGSIGTAGKNSVVTLDRGTVQGVQVGQ
VFDITQQGETIRDPKTKESIKLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1097485 ACM0O0_RS17910 WP_416040783.1 3822425..3823579(+) (tsaP) [Acinetobacter lactucae isolate nanjing]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTCGCACTTTTTAC
AGGGGTTGCTTTTGGTACAGTAGCAGAGGGTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAAAAGTAATGCAC
CACATGTCTACGTAGTAAAACGAGGAGATACACTCTGGGATATTTCCGGTCACTTTCTCAGTAAACCTTGGCGCTGGCCT
GAAATCTGGGCAAATAATCAACATGTCAAAAATCCGCACTGGATTTATCCGGGTGATCGGTTACTGCTATGTAGTTTAGA
TGGCCGTCCATTGGTTGGAAAAGATGAGGGAGATGGTTGTGTCGGCATTATTCGCCGTTACACAGGTCAAATGACAAATT
TACAACCTCAAGTACGTGTGGAGTCACTAAACAATAACGTACCTGTTATTCCTCTTGAGCATATTAAACAGTGGTTAGAA
CACAGCACTATTCTACCAGCCGATGCAATTGAACATACTCCTTATGTAGTTGGTACTGCCGATCAACGTGTACTCGCGGC
AAAAGGTCAAACTATTTATGCACGCGGACAAGGTTTAATTAATGGTCAACGTTATGCAGTCTACCGTGAAGGTGAACCTT
ATTATTTCACCGATAATAAAGGCAAAAAGCACAGTCTAGGTATTGAGCTACAACAAGTTGCCTCAGGCATCGCCATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGACAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTGATGCCAGA
AGAAGAGGCTACATTGCCTACTTTATTTTATCCGGTGAATGCTACTCAGGTGACGGATGGCGGCAAAATTATTCGTGTAA
TGGGATCAATTGGTACTGCTGGCAAAAATAGTGTAGTGACTTTGGACAGAGGTACTGTACAAGGTGTTCAAGTAGGTCAA
GTTTTTGATATTACGCAACAAGGTGAAACCATTCGAGATCCTAAAACAAAAGAATCAATAAAGTTACCTGGTCAACAAAT
TGGTAGCTTAATGGTTTTTAGAACTTTTGATCAATTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATTCAGCCACCCCGCTTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

89.844

100

0.898

Multiple sequence alignment