Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACM0O0_RS17460 Genome accession   NZ_CP180689
Coordinates   3728213..3728539 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter lactucae isolate nanjing     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3723213..3733539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS17440 - 3723321..3723947 (-) 627 WP_031947178.1 FHA domain-containing protein -
  ACM0O0_RS17445 gspD 3723988..3726258 (-) 2271 WP_416040758.1 type II secretion system secretin GspD -
  ACM0O0_RS17450 - 3726300..3727136 (-) 837 WP_373358151.1 type II secretion system protein N -
  ACM0O0_RS17455 gspN 3727136..3727879 (-) 744 WP_416040759.1 type II secretion system protein N -
  ACM0O0_RS17460 hns 3728213..3728539 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACM0O0_RS17465 - 3728734..3729174 (-) 441 WP_031947174.1 acyl-CoA thioesterase -
  ACM0O0_RS17470 - 3729182..3730375 (-) 1194 WP_416040760.1 heme biosynthesis protein HemY -
  ACM0O0_RS17475 - 3730385..3731227 (-) 843 WP_239968154.1 hypothetical protein -
  ACM0O0_RS17480 - 3731236..3732003 (-) 768 WP_239975927.1 uroporphyrinogen-III synthase -
  ACM0O0_RS17485 hemC 3732008..3732925 (-) 918 WP_239975926.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1097480 ACM0O0_RS17460 WP_000801427.1 3728213..3728539(-) (hns) [Acinetobacter lactucae isolate nanjing]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1097480 ACM0O0_RS17460 WP_000801427.1 3728213..3728539(-) (hns) [Acinetobacter lactucae isolate nanjing]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTAGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment