Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACM0O0_RS16965 Genome accession   NZ_CP180689
Coordinates   3618149..3620377 (+) Length   742 a.a.
NCBI ID   WP_416040735.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3613149..3625377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS16940 lnt 3613670..3615229 (+) 1560 WP_016144200.1 apolipoprotein N-acyltransferase -
  ACM0O0_RS16945 - 3615231..3615569 (-) 339 WP_016144199.1 tRNA-binding protein -
  ACM0O0_RS16950 - 3615715..3616059 (-) 345 WP_031947231.1 hypothetical protein -
  ACM0O0_RS16955 gspG 3616326..3616775 (-) 450 WP_171067922.1 type II secretion system major pseudopilin GspG -
  ACM0O0_RS16960 gspF 3616796..3618001 (-) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  ACM0O0_RS16965 priA 3618149..3620377 (+) 2229 WP_416040735.1 primosomal protein N' Machinery gene
  ACM0O0_RS16970 - 3620454..3622298 (+) 1845 WP_416040736.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ACM0O0_RS16975 - 3622462..3623337 (+) 876 WP_081175424.1 Hsp33 family molecular chaperone HslO -
  ACM0O0_RS16980 - 3623475..3624086 (+) 612 WP_416040737.1 LysE family translocator -
  ACM0O0_RS16985 - 3624233..3625189 (+) 957 WP_416040738.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84118.85 Da        Isoelectric Point: 8.5630

>NTDB_id=1097476 ACM0O0_RS16965 WP_416040735.1 3618149..3620377(+) (priA) [Acinetobacter lactucae isolate nanjing]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERARVGSRVAISFGRQNLIGIITEKVNPNESFTGTFQLKDISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVETLLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVLLGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKVVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPEHEVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=1097476 ACM0O0_RS16965 WP_416040735.1 3618149..3620377(+) (priA) [Acinetobacter lactucae isolate nanjing]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCCCGCGTAGGCTCACGCGTCGCTATTTCATTTGGACGCCAAAACCTGA
TTGGTATCATTACTGAAAAAGTGAACCCAAATGAATCATTTACAGGCACCTTTCAACTTAAAGACATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCAGCCCAGTATTACCAATTTCCAATTGGTGA
GGTCATGCAAACCGCCCTACCTGCATTATTGCGTCAGGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATTACAC
CATGTGATAATGTTGAAACACTTCTTAAACGCTCGGTAAAGCAACAAGACGCGTATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAAGGACTGGTAGA
CTGCACACTTGAACCACACGACTTTAGCCCATCGCCTGTTCAATTGGCACAAATGCCGCTCACACTCAATGAAGACCAAA
AGAAAGCAACCCAGCACGTCGTAAACGCACAGCATCAATACCAAGCCTTCTTGTTAGATGGTTTAACTGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTCCCAGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAATCGCGTTTTAACTGTGATATTGCTCTATTACACTCGGGCTTAAATGACTCTA
AACGTTTACAAGCATGGCAACAGGCTCAGACTGGCAAAGCATCTATTATTTTAGGCACACGCTCTGCGATTTATACGCCA
CTGCCACGTTTGGGCTTAATCATTTTAGATGAAGAACATGACTTGTCTTATAAACAGCAAGAAGGTTTCCGCTACCATGC
ACGTGATGTCGCCCTGTACCGTGGGCACTTGCAAAACTGCCCTGTTCTTTTAGGTTCAGCAACTCCAAGCATCGATAGTT
ATTATTTGGTCGAAACTGGCAAATTAACTTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAGTTGTCAAAAAACAACATGGTATTAGCCAACCTTTAATAGAACAAATTAAAAACACCTTAGCCAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTGTGTGAAAGCTGTGGCTGGCAAGCAA
ATTGTCCGCATTGTGATGCACATTTTACTTTGCATACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGCACTGTT
CATCGCTTGCCCGATCACTGCCCTGAATGTCAGCAAAAAAGCCTAAAAACCTTGGGTGCTGGAACAGCTAAGGTTGAAGA
ACACTTACAAGAATTATTTCCCGAACATGAGGTGATTCGGGTTGACCGTGACAGCACGAGTCGTGTCGGAAGCTGGCAAA
AAATTTATGATCGTATTCACCAAAACAAACCAACAATTTTGCTCGGCACTCAAATGTTGGCAAAAGGTCATCACTTCCCA
CACGTCACCTTAGTTGCTATTTTAGATATTGATGCGGGCTTACTGAGTGTCGATATTCGTGCGCCAGAACGTACTGCGCA
GTTAATTGTACAAGTCGCGGGACGTGCAGGCCGTGGCGAACATAAAGGCCATGTTTACTTACAAACCCTAAGACCAGATC
ACCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCGGTTGCCAAACAGACACTTGCAGAACGTAAAGTCGCATTG
CTGCCGCCTTATCGCTATGCCGTACTGATACGTGCAGAGTCCAAAGACCGTGACTATACCTTACATTTTTTAAATGAAGC
TGCCGAGCAACTTCGTCAAGTGGCTGGTGAAATTGTTGATATTTGGGGACCTATTCCAGCTCCTATGGAGCGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCACAA
TTAGTTCATGCGCCGCGCCAGCATCAACTCAGGCTATCAATTGATGTCGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.035

100

0.97

Multiple sequence alignment