Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACM0O0_RS10340 | Genome accession | NZ_CP180689 |
| Coordinates | 2219689..2220069 (-) | Length | 126 a.a. |
| NCBI ID | WP_031948175.1 | Uniprot ID | - |
| Organism | Acinetobacter lactucae isolate nanjing | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2214689..2225069
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM0O0_RS10310 | tadA | 2214810..2215313 (-) | 504 | WP_061875520.1 | tRNA adenosine(34) deaminase TadA | - |
| ACM0O0_RS10315 | - | 2215320..2216444 (-) | 1125 | WP_079748353.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACM0O0_RS10320 | ung | 2216441..2217154 (-) | 714 | WP_016145102.1 | uracil-DNA glycosylase | - |
| ACM0O0_RS10325 | - | 2217208..2217804 (-) | 597 | WP_016145101.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| ACM0O0_RS10330 | gspK | 2218032..2218991 (-) | 960 | WP_373357540.1 | type II secretion system minor pseudopilin GspK | - |
| ACM0O0_RS10335 | xcpW | 2218991..2219689 (-) | 699 | WP_057106322.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACM0O0_RS10340 | xcpV | 2219689..2220069 (-) | 381 | WP_031948175.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ACM0O0_RS10345 | - | 2220059..2220613 (-) | 555 | WP_057106321.1 | type II secretion system protein | - |
| ACM0O0_RS10350 | - | 2220620..2221228 (-) | 609 | WP_014206595.1 | TetR/AcrR family transcriptional regulator | - |
| ACM0O0_RS10355 | - | 2221265..2222038 (-) | 774 | WP_373357542.1 | TatD family hydrolase | - |
| ACM0O0_RS10360 | - | 2222056..2222397 (-) | 342 | WP_002121335.1 | PilZ domain-containing protein | - |
| ACM0O0_RS10365 | - | 2222408..2223388 (-) | 981 | WP_163119588.1 | DNA polymerase III subunit delta' | - |
| ACM0O0_RS10370 | kdsB | 2223402..2224163 (-) | 762 | WP_373357543.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13976.17 Da Isoelectric Point: 9.4463
>NTDB_id=1097464 ACM0O0_RS10340 WP_031948175.1 2219689..2220069(-) (xcpV) [Acinetobacter lactucae isolate nanjing]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKIQNGITHLVFFNYPMKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKIQNGITHLVFFNYPMKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1097464 ACM0O0_RS10340 WP_031948175.1 2219689..2220069(-) (xcpV) [Acinetobacter lactucae isolate nanjing]
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGCTAACTAA
AGTAGCCATGCAGTACACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAGTGGCTTGAAGGTACGCAAAGCAAGCAAGTTACTTCCCAAGGTGAAACTTGGCAGATT
GATAAATCTGCACAATCCACAATTAGCCCGAATGTTCAGAAAGTAGATTTGCAAATTAGCTTATATGATTCTGATAAAGG
GAAAATTCAAAATGGTATTACTCACTTAGTATTTTTTAATTATCCAATGAAAGCAAAATAA
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGCTAACTAA
AGTAGCCATGCAGTACACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAGTGGCTTGAAGGTACGCAAAGCAAGCAAGTTACTTCCCAAGGTGAAACTTGGCAGATT
GATAAATCTGCACAATCCACAATTAGCCCGAATGTTCAGAAAGTAGATTTGCAAATTAGCTTATATGATTCTGATAAAGG
GAAAATTCAAAATGGTATTACTCACTTAGTATTTTTTAATTATCCAATGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
93.651 |
100 |
0.937 |