Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   ACM0O0_RS03280 Genome accession   NZ_CP180689
Coordinates   661659..666143 (+) Length   1494 a.a.
NCBI ID   WP_416041079.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 656659..671143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS03255 - 657101..657739 (-) 639 WP_416041078.1 hypothetical protein -
  ACM0O0_RS03260 pilG 658024..658407 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ACM0O0_RS03265 - 658431..658793 (+) 363 WP_002116220.1 response regulator -
  ACM0O0_RS03270 - 658854..659390 (+) 537 WP_002116439.1 chemotaxis protein CheW -
  ACM0O0_RS03275 - 659433..661511 (+) 2079 WP_016143403.1 methyl-accepting chemotaxis protein -
  ACM0O0_RS03280 chpA 661659..666143 (+) 4485 WP_416041079.1 Hpt domain-containing protein Regulator
  ACM0O0_RS03285 - 666143..666610 (+) 468 WP_061874139.1 hypothetical protein -
  ACM0O0_RS03290 - 666812..668203 (+) 1392 WP_061874850.1 coproporphyrinogen-III oxidase family protein -
  ACM0O0_RS03295 - 668212..669093 (+) 882 WP_061874851.1 alpha/beta fold hydrolase -
  ACM0O0_RS03300 dapE 669231..670367 (-) 1137 WP_031949215.1 succinyl-diaminopimelate desuccinylase -
  ACM0O0_RS03305 - 670493..670636 (-) 144 WP_014207555.1 entericidin A/B family lipoprotein -

Sequence


Protein


Download         Length: 1494 a.a.        Molecular weight: 170502.00 Da        Isoelectric Point: 4.4543

>NTDB_id=1097459 ACM0O0_RS03280 WP_416041079.1 661659..666143(+) (chpA) [Acinetobacter lactucae isolate nanjing]
MKEILKTLTEAMMLPEDSYSQQDDEFLEIFVEEIEEIFVELQSLIDEWMQSESIAKLIEIRRYFHTLKGSGRMIGAKSSA
ELAWTVEDTLNRVINQSLGLTPNIQQYVQLVFKFYFFKLVDDFKSKKDHSLDFKPLILLGQQLQQQQSLEPALDELLLLS
DILTAETQTGLETHDLEPETAKVLTISTPEVAIENEQTLAETLILFMEEAEEHLATIDHFLEQEIHQHESYNALIRALHT
LRGSSAMAHVEPIFDASTKVEHLFKILLQEELSSHSEEISLLRDYRELIRNSLDLLAAHCSTEQLESDLQKFNQIWDAYM
EQHGEHSSPLMPPHGLVSQLLQLDVAELLDAELDFEKGVRTEFPHYLERLSEQADVLLQHTQSQAMVGLYEYTNQLKESY
DILLERPDLLQSDYVFEIYQKAHQQLIQLFDALAAGQRVSIIEQHQNVLEELKLYTQHIPILNIEPTFNTEVEQTTNKPL
IENVFTDQVTIGQSVQLDRQFISSEHVNRHFDPDLLDIFLEEADELLEGMDTDLNIWVKDQENFAALNNLMRYLHTLKGG
ANMIQATYIGLIAHELESIYERLIQKQLIASSALIDFIRLVQDDLADRLQIVREQHLDYAASHTIQALKNAAQTYDSFSS
TVKDEQTQTEAYVIPELNFEALQQEVINNTALSFSELTSGSEQFAESNNQLVEHAELQVLDTDQGYKETLQDQDINSVVE
QTFMEEAAELLEMADHLLRQWFEQRTNRSILLQLQRAVHSLKGGSRMLGLETVQAIAYQLENAFEQFALHHFSSNIYDNL
LESAIVWLKEAIFKQNYQHFDGLQQSLENIQFIETAIQIPSKLTRTNLFSMEPVMSFVQGDGTEPPPMMGAWEHTERLDQ
NNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFGHTLAEMELAIQRLADQLRRMEGELETQIIAKHGIENSRYTEFD
PLEMDQYSSLNQLSKSLAESASDLVDFKNTLSEKIRDTEGLLVQQSRIQAEIQEGLMRTRLVPFSRLLPRLQRIVRQTST
ALNRPAELFVNNTEGELDRTMLERLVTPLEHMLRNAIDHGLEDRAQREQAQKPEIGRIELNIHRQGTDVVVTFKDDGQGI
DIEKVRQKALISGLIHSEQVLEHQDILQLIFHPGLSTADQVTQISGRGVGLDVVQSDIKALGGHVSVDSVYGQGTVFTIR
VPTTVAVSDALMVKVADQQFAIPLAQIDRIVRVSPALLEQYFGSAQEFFEFENKRYSLRYLSEFVGNQPIPRLSGMMYSL
PVLMIKANNGQTVALLVDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNIARQIQSTRRHKSLNEAIY
RQRESDERRLIMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFEVLNLVRHHDLH
QDMPVIMITSRTGEKHRERAFALGVNQYMGKPFQEEDLLHNIDALFMTFEGGLA

Nucleotide


Download         Length: 4485 bp        

>NTDB_id=1097459 ACM0O0_RS03280 WP_416041079.1 661659..666143(+) (chpA) [Acinetobacter lactucae isolate nanjing]
ATGAAAGAAATATTAAAAACTTTAACTGAAGCAATGATGCTACCGGAAGATAGCTATTCTCAACAAGATGATGAATTTCT
TGAAATCTTTGTCGAAGAAATTGAGGAAATTTTTGTTGAATTACAATCTTTGATTGACGAGTGGATGCAATCTGAAAGTA
TTGCTAAGCTTATCGAAATCCGCCGTTATTTTCATACATTGAAAGGTTCTGGCCGGATGATTGGTGCCAAATCATCTGCT
GAGCTTGCTTGGACTGTAGAAGATACGCTTAATCGGGTAATCAATCAGAGTCTTGGATTAACTCCTAATATCCAACAATA
TGTTCAGTTGGTATTTAAGTTCTATTTCTTTAAGTTAGTCGATGACTTCAAATCTAAAAAAGATCATAGCCTAGACTTTA
AACCCCTCATTTTATTGGGGCAACAATTACAACAACAGCAAAGTTTAGAACCCGCTTTAGACGAGCTTTTATTATTATCA
GATATCCTTACTGCTGAAACTCAAACTGGTTTAGAAACACATGATTTAGAACCAGAAACAGCTAAAGTTTTAACTATATC
TACTCCAGAAGTCGCTATAGAAAATGAGCAGACCCTTGCTGAAACCTTAATTTTATTTATGGAAGAAGCAGAAGAACACT
TAGCGACGATTGATCATTTTTTAGAACAAGAAATACATCAGCATGAAAGTTATAATGCTTTAATACGTGCGTTACATACG
TTACGTGGCAGCTCGGCCATGGCGCATGTTGAACCAATCTTTGATGCCAGTACCAAGGTTGAGCATTTATTTAAAATACT
ATTACAAGAAGAGCTTTCTTCTCACTCTGAAGAAATTTCATTACTCCGTGATTATCGTGAGCTTATTCGAAATAGTTTAG
ATCTATTGGCTGCACATTGCTCTACTGAGCAATTGGAATCTGATCTACAAAAATTTAATCAGATTTGGGATGCTTATATG
GAGCAGCATGGTGAGCATTCAAGCCCACTCATGCCTCCACATGGATTAGTGTCTCAGTTATTACAGCTAGATGTTGCTGA
ATTACTTGATGCGGAATTAGATTTTGAGAAGGGAGTACGGACAGAGTTTCCTCATTATCTTGAACGTTTAAGTGAACAAG
CAGATGTGTTGTTGCAACACACTCAGTCGCAAGCAATGGTTGGTTTATATGAATATACTAACCAGTTGAAAGAAAGCTAT
GACATATTACTTGAACGACCTGATTTATTACAATCAGACTATGTTTTTGAAATTTATCAAAAAGCGCACCAACAATTAAT
TCAATTATTTGATGCCTTAGCTGCGGGACAAAGAGTAAGTATTATTGAGCAACACCAAAATGTCTTGGAAGAGCTAAAAC
TATATACTCAACATATTCCAATTCTTAATATTGAACCAACCTTTAATACTGAAGTTGAACAAACAACGAATAAACCTCTG
ATAGAAAATGTATTCACTGATCAGGTCACAATAGGGCAGAGTGTACAACTAGATCGACAATTCATTTCGTCTGAGCATGT
AAACCGTCATTTTGATCCAGATCTATTAGATATTTTTCTTGAAGAAGCTGATGAGTTGCTTGAAGGGATGGATACAGATC
TTAATATTTGGGTTAAAGATCAAGAAAACTTTGCCGCTCTTAATAATCTGATGCGTTATTTGCATACCTTAAAAGGTGGG
GCAAATATGATTCAGGCAACTTATATTGGTTTAATTGCACATGAATTAGAAAGTATTTATGAGCGATTAATTCAAAAACA
GTTAATAGCTTCGTCTGCTCTCATTGATTTTATTCGACTAGTTCAAGATGACTTGGCTGACCGTCTTCAAATAGTACGTG
AACAGCATCTAGATTATGCTGCTTCTCATACTATTCAAGCGCTTAAAAATGCAGCCCAGACCTATGATTCATTTAGTTCT
ACTGTTAAAGATGAGCAAACACAAACTGAAGCATATGTTATACCTGAATTAAATTTTGAAGCATTACAGCAAGAAGTAAT
AAATAATACGGCATTAAGCTTCAGTGAGTTAACTTCTGGTTCTGAGCAGTTTGCCGAGTCTAATAATCAACTTGTTGAAC
ACGCTGAATTACAAGTGCTTGATACTGACCAAGGCTATAAAGAAACTCTCCAAGATCAAGATATTAACTCTGTTGTCGAG
CAGACGTTTATGGAGGAAGCGGCCGAACTATTAGAGATGGCCGATCACTTATTAAGACAATGGTTCGAGCAGCGTACAAA
CCGTAGTATCTTGCTTCAACTGCAAAGGGCAGTGCACAGCTTGAAAGGTGGTTCCCGTATGTTGGGACTTGAAACCGTAC
AAGCGATTGCTTATCAGCTCGAAAACGCTTTTGAACAGTTTGCGCTTCATCATTTCAGCTCAAATATCTATGACAACTTA
TTAGAGAGTGCAATTGTCTGGTTAAAAGAGGCAATTTTTAAACAAAATTATCAACACTTCGATGGTTTACAACAAAGTCT
GGAAAATATTCAGTTCATTGAAACAGCAATTCAAATTCCTAGTAAATTAACTAGAACTAATCTATTTAGCATGGAACCTG
TAATGAGTTTTGTGCAAGGTGACGGTACAGAACCGCCGCCAATGATGGGCGCATGGGAACACACAGAACGGCTTGATCAA
AATAATGAGATGATTCGAGTTTCGGCAGATTTAATTGAAAAAATGATTGATCTGTCTGGTGAAAACTCGATTAACCGTTC
GCGAATTGAAATGGATTTAAGCCAATTTGGTCATACCTTAGCGGAAATGGAATTGGCTATTCAGCGACTTGCAGATCAGT
TGCGTCGAATGGAAGGCGAATTGGAAACCCAAATTATTGCAAAACACGGTATTGAGAACTCGCGTTATACAGAATTTGAT
CCGTTAGAGATGGACCAATATTCTTCGTTAAATCAGTTATCAAAGTCTCTTGCAGAGTCTGCATCGGATTTAGTAGATTT
TAAAAATACATTATCTGAAAAGATCAGAGACACTGAAGGTTTATTGGTACAGCAATCGCGTATTCAGGCTGAAATTCAAG
AAGGTCTCATGCGAACACGCTTAGTACCATTCTCTCGATTGTTGCCTCGTCTACAAAGAATTGTGAGGCAGACTTCTACC
GCGTTAAATCGACCAGCAGAGCTTTTCGTGAATAATACGGAAGGCGAGCTGGACCGGACAATGCTAGAGCGTTTGGTTAC
GCCACTTGAGCACATGCTTAGAAATGCAATTGACCATGGACTAGAAGATCGAGCGCAACGTGAGCAAGCGCAGAAACCTG
AAATTGGACGTATTGAACTGAATATTCATCGTCAAGGTACAGATGTTGTCGTTACATTTAAGGACGATGGACAAGGTATT
GATATCGAGAAGGTTCGTCAAAAAGCATTAATATCTGGTTTGATTCACTCTGAACAAGTATTAGAACATCAAGATATTTT
ACAGCTGATTTTCCATCCTGGTTTAAGCACAGCCGATCAAGTCACTCAGATTTCAGGTCGTGGTGTAGGACTGGATGTAG
TGCAGAGTGATATTAAGGCCTTAGGTGGCCACGTAAGTGTCGACTCTGTCTATGGGCAGGGTACTGTCTTTACCATACGT
GTTCCAACGACAGTAGCTGTTAGTGATGCCTTAATGGTTAAAGTTGCTGATCAGCAGTTTGCAATCCCATTAGCGCAAAT
TGATCGAATTGTGCGGGTTTCACCAGCATTATTAGAACAATATTTCGGAAGTGCACAAGAGTTCTTTGAATTTGAAAATA
AACGCTATTCATTACGTTATTTATCTGAGTTTGTTGGTAATCAACCAATTCCGCGCTTAAGTGGAATGATGTATTCATTA
CCAGTATTAATGATTAAGGCAAATAATGGACAAACCGTTGCATTATTAGTTGACCAACTGATTGGCTCACGTGCACAGAT
TGTAGTTAAACCAATTGGACAACAATTCTCTAGCATTGGCGCGATTGCAGGAGCAACTATTTTAGGTGATGGTCAAGTTT
GCTTAATTTTAGATGGACAAAATATTGCTCGCCAAATTCAATCTACTCGCCGACATAAATCGCTTAATGAAGCTATCTAT
AGACAACGCGAGTCTGATGAACGACGTCTTATCATGATTGTAGATGACTCGGTAACTGTACGTAAGGTGACGTCTCGCTT
ACTTGAACGTCAGGGCTATGATGTAGTCACAGCTAAAGATGGGGTTGATGCCATTGAGCAATTGGAAAATATTAAACCAG
ATCTCATGTTACTTGATATTGAAATGCCGCGAATGGATGGCTTTGAGGTGCTTAACCTCGTTCGACATCATGATCTACAC
CAAGATATGCCAGTGATTATGATTACATCACGAACTGGTGAAAAACACCGTGAACGAGCATTTGCTTTAGGTGTTAACCA
GTACATGGGTAAACCTTTCCAAGAAGAAGACTTACTTCACAATATTGATGCCTTATTCATGACATTTGAAGGGGGACTTG
CCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

79.615

100

0.803


Multiple sequence alignment