Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACM0O0_RS02360 Genome accession   NZ_CP180689
Coordinates   473806..474690 (+) Length   294 a.a.
NCBI ID   WP_416041009.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 468806..479690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS02335 - 469116..470363 (-) 1248 WP_016143545.1 YihY family inner membrane protein -
  ACM0O0_RS02340 wrbA 470725..471333 (+) 609 WP_373358491.1 NAD(P)H:quinone oxidoreductase -
  ACM0O0_RS02345 - 471381..471956 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  ACM0O0_RS02350 - 472028..472741 (-) 714 WP_057104940.1 DUF3108 domain-containing protein -
  ACM0O0_RS02355 - 472899..473573 (-) 675 WP_416041008.1 hypothetical protein -
  ACM0O0_RS02360 tonB2 473806..474690 (+) 885 WP_416041009.1 TonB family protein Machinery gene
  ACM0O0_RS02365 ybeY 474742..475218 (-) 477 WP_002119528.1 rRNA maturation RNase YbeY -
  ACM0O0_RS02370 - 475228..476316 (-) 1089 WP_002119513.1 PhoH family protein -
  ACM0O0_RS02375 miaB 476354..477805 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33792.43 Da        Isoelectric Point: 9.4831

>NTDB_id=1097457 ACM0O0_RS02360 WP_416041009.1 473806..474690(+) (tonB2) [Acinetobacter lactucae isolate nanjing]
MLNKRSRFIEPFHYWWQDRVFVAATILAILLHIFVLLIQFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTLNPMLRDASTGNAELETLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1097457 ACM0O0_RS02360 WP_416041009.1 473806..474690(+) (tonB2) [Acinetobacter lactucae isolate nanjing]
ATGCTGAACAAAAGAAGCCGATTCATAGAGCCTTTTCATTATTGGTGGCAAGACAGAGTCTTTGTTGCTGCAACAATATT
AGCAATTTTGCTGCATATTTTTGTATTGCTCATTCAATTTGCTATGCCCAGCCCGTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGACCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTAGCGCAAGCAGACCAGCAGGGTTCAGGTGCA
TTTCGTGAGGCTCACCGGACTTCTAGTGATACTCTAAATCCTATGCTTAGGGATGCTTCAACTGGAAATGCAGAGTTAGA
AACTTTGCAAAAGATTCAGCAACAAAGAGAGCTTAAGTTTGAAGAAAAAGTCTTAATGACAGTTTTGAGTTGGCAAAAAC
AAGCTGATGCAAGTCAAAGGAAAAAAGAATTAGAACAATTACAAAGTCAATTTCAGGCAAAAGCTGCGATGGTTGCCAGC
CTTGAAGCACAATATTTACAACGTAGACAAGATTTCAGCCGCCAGCAAAAAATAAAAACAGTAGACGGAATTCAAGCAAA
GAAAGATGCCTCGGCTGCTTATTTAGATAAGTTCCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTATCCGGAAGAGG
CCAAACAACAACAGCTAAGAGGTGAAGTGCGTTTAATGGTGATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGACTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCTAAGTCTTCAGTACGTCGCGGCGCACCATTTGGACATTTTGA
TGCCAATATGAAAGACATTTCGGAATTACGTATTGTACGTACTTGGCGCTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.755

100

0.878

Multiple sequence alignment