Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ABWV75_RS04500 Genome accession   NZ_AP031487
Coordinates   889646..890362 (-) Length   238 a.a.
NCBI ID   WP_353318723.1    Uniprot ID   -
Organism   Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 884646..895362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWV75_RS04480 (SKB0068_08800) - 885314..885538 (+) 225 WP_002448268.1 sulfurtransferase TusA family protein -
  ABWV75_RS04485 (SKB0068_08810) - 885649..886893 (+) 1245 WP_049336643.1 ammonium transporter -
  ABWV75_RS04490 (SKB0068_08820) - 887148..888635 (+) 1488 WP_353318722.1 sucrose-6-phosphate hydrolase -
  ABWV75_RS04495 (SKB0068_08830) - 888636..889595 (+) 960 WP_087437175.1 carbohydrate kinase -
  ABWV75_RS04500 (SKB0068_08840) agrA 889646..890362 (-) 717 WP_353318723.1 quorum-sensing response regulator AgrA Regulator
  ABWV75_RS04505 (SKB0068_08850) agrC 890375..891664 (-) 1290 WP_353318724.1 quorum-sensing sensor histidine kinase AgrC -
  ABWV75_RS04510 (SKB0068_08860) agrD 891688..891828 (-) 141 WP_049417668.1 cyclic lactone autoinducer peptide AgrD -
  ABWV75_RS04515 (SKB0068_08870) - 891831..892397 (-) 567 WP_087437174.1 accessory gene regulator AgrB -
  ABWV75_RS04520 (SKB0068_08880) - 893099..893884 (-) 786 WP_071859786.1 carbon-nitrogen family hydrolase -
  ABWV75_RS04525 (SKB0068_08890) - 894015..894638 (-) 624 WP_353318725.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27890.81 Da        Isoelectric Point: 5.2104

>NTDB_id=109736 ABWV75_RS04500 WP_353318723.1 889646..890362(-) (agrA) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
MKIFICEDDMKQRENMVSIINNYIMIEEKPMEIALATDDPYEIIEQSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPNQLKTRIIDCIETAHTRLKLLSKESNVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIDSVDSKERIVTFRNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=109736 ABWV75_RS04500 WP_353318723.1 889646..890362(-) (agrA) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
ATGAAAATATTCATTTGTGAAGACGATATGAAACAACGTGAAAATATGGTTTCAATTATTAACAACTATATAATGATTGA
AGAAAAACCGATGGAAATAGCGTTAGCGACAGATGATCCTTATGAAATTATTGAACAGTCAAAAGAAATGAATGATGTTG
GATGTTATTTTTTAGATATACAATTGGAAGCTGATATTAACGGTATTAAACTTGGAAGTGAAATTCGAAAGTATGATCCT
ATTGGGAATATCATCTTTGTTACAAGTCATAGTGAACTCACTTACCTAACATTTGTCTATAAGGTATCTGCAATGGATTT
TATTTTTAAAGATGATCCTAATCAACTAAAAACGAGAATAATAGATTGCATTGAAACTGCTCATACACGTTTAAAATTAC
TTTCAAAAGAAAGCAATGTTGAAACAATTGAATTAAAGCGTGGTAGCAATTCAATATATGTACAATATGATGATGTCATG
TTCTTTGAATCGTCTACAAAATCCCATCGTTTAATTGCACATCTTGATAACCGTCAGATTGAATTCTACGGAAATCTTAA
AGAATTAGCACAACTCGATGATCGTTTTTTCAGATGTCACAATAGTTTTGTTGTAAATCGCCATAATATCGATTCAGTCG
ATTCTAAAGAACGAATTGTAACTTTCAGAAATGGTGAGCATTGCTATGCCTCTGTACGTAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.395

100

0.874

Multiple sequence alignment