Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACM3IF_RS16875 Genome accession   NZ_CP180663
Coordinates   3414651..3415247 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain JHKP140     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3409651..3420247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM3IF_RS16860 helD 3409859..3411913 (-) 2055 WP_009308304.1 DNA helicase IV -
  ACM3IF_RS16865 - 3412038..3412484 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ACM3IF_RS16870 yccS 3412502..3414637 (+) 2136 WP_021465041.1 YccS family putative transporter -
  ACM3IF_RS16875 sxy/tfoX 3414651..3415247 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACM3IF_RS16880 sulA 3415596..3416105 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACM3IF_RS16885 ompA 3416458..3417528 (+) 1071 WP_002898408.1 porin OmpA -
  ACM3IF_RS16890 matP 3417661..3418113 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACM3IF_RS16895 - 3418299..3420056 (+) 1758 WP_114444798.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1097254 ACM3IF_RS16875 WP_004179217.1 3414651..3415247(-) (sxy/tfoX) [Klebsiella pneumoniae strain JHKP140]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1097254 ACM3IF_RS16875 WP_004179217.1 3414651..3415247(-) (sxy/tfoX) [Klebsiella pneumoniae strain JHKP140]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment