Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HV95_RS12390 Genome accession   NZ_CP008864
Coordinates   2570819..2571148 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain W60856     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2565819..2576148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV95_RS12375 (HV95_05835) - 2566434..2567396 (+) 963 WP_016253165.1 UDP-glucose 4-epimerase family protein -
  HV95_RS12380 (HV95_05840) - 2567396..2568433 (+) 1038 WP_003452706.1 MraY family glycosyltransferase -
  HV95_RS12385 (HV95_05845) - 2568631..2570628 (+) 1998 WP_031689659.1 polysaccharide biosynthesis protein -
  HV95_RS12390 (HV95_05850) comEA/comE1 2570819..2571148 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  HV95_RS12400 (HV95_05860) - 2571365..2572561 (-) 1197 WP_031689660.1 amino acid aminotransferase -
  HV95_RS12405 (HV95_05865) uvrB 2572749..2574761 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=109723 HV95_RS12390 WP_003104586.1 2570819..2571148(+) (comEA/comE1) [Pseudomonas aeruginosa strain W60856]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=109723 HV95_RS12390 WP_003104586.1 2570819..2571148(+) (comEA/comE1) [Pseudomonas aeruginosa strain W60856]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment