Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABWU76_RS01210 Genome accession   NZ_AP031486
Coordinates   234611..236371 (+) Length   586 a.a.
NCBI ID   WP_353316846.1    Uniprot ID   -
Organism   Finegoldia magna strain NBRC 113804     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 229611..241371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWU76_RS01190 (DN0046_02160) moaA 230656..231603 (+) 948 WP_353316845.1 GTP 3',8-cyclase MoaA -
  ABWU76_RS01195 (DN0046_02170) - 231605..232519 (+) 915 WP_002836910.1 cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein -
  ABWU76_RS01200 (DN0046_02180) thiC 232700..234001 (+) 1302 WP_110058397.1 phosphomethylpyrimidine synthase ThiC -
  ABWU76_RS01205 (DN0046_02190) - 234160..234636 (+) 477 WP_278726437.1 winged helix DNA-binding protein -
  ABWU76_RS01210 (DN0046_02200) rcrP 234611..236371 (+) 1761 WP_353316846.1 ABC transporter ATP-binding protein Regulator
  ABWU76_RS01215 (DN0046_02210) rcrQ 236364..238160 (+) 1797 WP_353316847.1 ABC transporter ATP-binding protein Regulator
  ABWU76_RS01220 (DN0046_02220) rlmD 238253..239467 (+) 1215 WP_353316848.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  ABWU76_RS01225 (DN0046_02230) tnpA 239818..240276 (+) 459 WP_009431087.1 IS200/IS605 family transposase -
  ABWU76_RS01230 (DN0046_02240) - 240532..241119 (+) 588 WP_353316849.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 66510.50 Da        Isoelectric Point: 5.3341

>NTDB_id=109718 ABWU76_RS01210 WP_353316846.1 234611..236371(+) (rcrP) [Finegoldia magna strain NBRC 113804]
MIVLIKIIRYLNKKQWMQILLSFVFIVTQVYLDLKIPDYMSKITMYVESPGHTVSDIIGEGKWMLLCAFGSLISAIIVGY
LASKVSASFSKDLRSRIFSKVESFSMKEINEFSTASLITRSTNDITQIQMVIVIGLQILIKAPIMAVWAIKKIYNKGFEW
TMATAVTVVILIIFVAILMILVMPKFRIMQTLTDNINRILRENLTGLAVIRAYNSEEFREGKFEEANVELTNTQLFTSRA
MSTMFPAINLGMSVLTLVIYFIGAGLINAANMMDKYVLFSNMVVFSSYAMQVIMSFMMMSMIFIMIPRAQISANRINEVL
DTELSIKDGDIDTSNEDYEYEIEFDNVSFKYTDSEQYILKDIDFRVKKGEKVAIIGSTGSGKSTILNLLLRFYDATEGVV
KIQGIDIRKYKLKFLYEKIGAVFQKSFLFKGNVKSNISFSEDGMDNEKVEQAADTSQSMEFIDKFDDKFDHEIAQLGKNV
SGGQKQRLSIARAIYKKPDIYLFDDSFSALDFKTDSELRHQLREKSPDATTIIVAQRVGSIMDSDQIIVLENGEIAGIGK
HKDLLQNCEVYKEIAYSQLTEEELNA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=109718 ABWU76_RS01210 WP_353316846.1 234611..236371(+) (rcrP) [Finegoldia magna strain NBRC 113804]
ATGATAGTTTTGATAAAAATAATTAGATATTTGAATAAAAAACAATGGATGCAGATACTTTTGAGTTTTGTGTTTATCGT
TACTCAAGTGTATTTGGATTTGAAAATTCCGGATTATATGTCGAAAATCACGATGTATGTGGAAAGTCCGGGTCACACTG
TAAGTGATATTATAGGCGAAGGGAAATGGATGCTTTTGTGTGCATTTGGTTCTTTGATTTCAGCAATTATCGTAGGATAT
TTGGCTTCGAAGGTTTCTGCGTCATTCTCCAAAGATTTGAGGTCTAGAATATTTTCCAAGGTGGAAAGTTTCTCTATGAA
AGAAATCAACGAATTTTCCACAGCAAGTTTGATAACTAGATCTACAAATGATATCACTCAAATTCAAATGGTAATAGTGA
TAGGATTACAAATTTTAATTAAAGCGCCGATAATGGCTGTGTGGGCTATCAAGAAAATCTACAACAAGGGATTTGAATGG
ACAATGGCGACTGCTGTCACTGTTGTGATATTGATCATTTTCGTTGCAATTCTAATGATTTTAGTTATGCCGAAATTCAG
AATAATGCAAACTTTAACAGATAATATCAACAGGATTTTGCGTGAAAACTTGACAGGACTTGCAGTTATAAGAGCATATA
ATTCTGAAGAATTTAGAGAAGGAAAGTTTGAAGAAGCAAATGTTGAATTGACAAATACTCAACTGTTCACAAGTCGCGCA
ATGAGTACGATGTTTCCTGCAATTAATTTGGGAATGTCTGTTCTAACTCTTGTGATTTATTTCATAGGGGCAGGACTCAT
AAATGCTGCGAATATGATGGATAAATACGTTTTGTTCTCAAATATGGTTGTGTTCAGTTCGTATGCAATGCAAGTTATCA
TGTCATTTATGATGATGAGCATGATTTTCATCATGATTCCAAGAGCGCAAATCTCTGCAAATCGTATCAACGAAGTGTTG
GATACAGAACTTTCAATTAAAGATGGAGATATTGACACATCAAATGAAGATTACGAATATGAAATTGAGTTTGACAATGT
ATCTTTCAAATACACAGATTCTGAGCAATATATTTTAAAGGATATTGATTTTAGGGTGAAAAAAGGAGAAAAGGTAGCTA
TAATAGGCTCCACAGGCTCTGGTAAAAGCACTATCTTGAATTTGCTTTTGAGATTTTATGATGCAACAGAAGGTGTCGTA
AAAATCCAAGGAATCGACATTAGAAAGTATAAGCTTAAATTTTTGTACGAAAAAATAGGCGCCGTTTTTCAAAAATCATT
TCTTTTCAAAGGAAATGTAAAATCGAACATTTCATTCTCAGAAGATGGTATGGATAATGAAAAAGTAGAACAAGCGGCAG
ATACTTCGCAATCAATGGAGTTTATCGACAAATTTGACGATAAATTTGACCACGAAATCGCACAATTGGGTAAGAATGTT
TCTGGTGGACAAAAACAAAGGCTGTCAATAGCCAGAGCAATTTACAAAAAGCCAGATATTTATCTGTTTGACGACAGTTT
CTCTGCACTTGATTTCAAAACAGATAGCGAACTTAGACACCAATTGAGAGAAAAAAGCCCCGATGCTACAACTATTATTG
TCGCACAAAGGGTGGGTTCGATAATGGATTCAGATCAAATAATCGTACTTGAAAACGGAGAAATAGCAGGAATAGGTAAA
CACAAGGATTTATTACAAAATTGTGAAGTTTACAAGGAAATAGCCTACTCGCAATTAACAGAGGAGGAATTAAATGCCTA
G

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(21-296)

ABC transporter (ABC_tran)

(359-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.315

100

0.481

Multiple sequence alignment