Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | ACL43R_RS07960 | Genome accession | NZ_CP180647 |
| Coordinates | 1601828..1604074 (-) | Length | 748 a.a. |
| NCBI ID | WP_270265392.1 | Uniprot ID | - |
| Organism | Lactococcus formosensis strain JAL11 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1596828..1609074
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACL43R_RS07935 (ACL43R_07935) | fabZ | 1597157..1597615 (+) | 459 | WP_003134189.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ACL43R_RS07940 (ACL43R_07940) | uvrB | 1597643..1599631 (-) | 1989 | WP_061414792.1 | excinuclease ABC subunit UvrB | - |
| ACL43R_RS07945 (ACL43R_07945) | - | 1599628..1600083 (-) | 456 | WP_270741318.1 | RNA pyrophosphohydrolase | - |
| ACL43R_RS07950 (ACL43R_07950) | def | 1600188..1600814 (+) | 627 | WP_096369151.1 | peptide deformylase | - |
| ACL43R_RS07955 (ACL43R_07955) | yqeK | 1601186..1601773 (-) | 588 | WP_416037462.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK | - |
| ACL43R_RS07960 (ACL43R_07960) | clpC | 1601828..1604074 (-) | 2247 | WP_270265392.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| ACL43R_RS07965 (ACL43R_07965) | rpoD | 1604292..1605674 (-) | 1383 | WP_165713723.1 | RNA polymerase sigma factor RpoD | - |
| ACL43R_RS07970 (ACL43R_07970) | dnaG | 1605710..1607596 (-) | 1887 | WP_308004752.1 | DNA primase | - |
Sequence
Protein
Download Length: 748 a.a. Molecular weight: 83428.38 Da Isoelectric Point: 4.7203
>NTDB_id=1097158 ACL43R_RS07960 WP_270265392.1 1601828..1604074(-) (clpC) [Lactococcus formosensis strain JAL11]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGDGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNTQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKDTADTSDNEDEEK
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGDGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNTQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKDTADTSDNEDEEK
Nucleotide
Download Length: 2247 bp
>NTDB_id=1097158 ACL43R_RS07960 WP_270265392.1 1601828..1604074(-) (clpC) [Lactococcus formosensis strain JAL11]
ATGCTCTGCCAAAATTGTAAAATAAATGAAGCGACAATTCACCTTTATACGAATGTGAATGGACAACGTAAGCAAGTGGA
TTTATGCCAAAATTGCTATCAAATTATGAAATCAGGAGGTCAAGAAAGCTTGTTTGCTGGGGCGACAAATATTTCTAATA
ATGATGACCCATTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGACGGACAATGACACCTCCA
ACACAAGCTGGAGGTCGAGGTCCAGGAGGACCACAAAATCCTCGTGGAGGTCAAGCACCTAAAGGACTTCTCGAAGAGTT
CGGAGTCAATATCACAGATGCCGCACGCCGTGGAGAAATTGATCCTGTTATTGGGCGAGATTCTGAAATTACACGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCAGGTGTTGGTAAAACAGCAGTTGTTGAA
GGGTTAGCCCAAAAAATCGTTGATGGTGATGTACCACAAAAATTGCAAAATAAAGAAGTTATACGTCTTGATGTTGTTAG
CCTCGTCCAAGGTACTGGTGTACGTGGGCAATTTGAAGAACGTATGCAAAAGCTGATGGAAGAGATTCGTAAACGCGATG
ATGTTATCCTCTTCATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCAGCAGGTGATGGCAATATGGATGCAGGAAAT
ATTCTAAAACCAGCTTTGGCGCGTGGTGAACTACAACTTGTTGGGGCAACAACACTCAATGAATATAGAATTATCGAAAA
AGACGCGGCACTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCCTCTGTAGATGAGACCATTACGATTTTACGTG
GGATTCAAAAACGCTATGAAGACTATCATCATGTGAAATATTCAGATGAAGCAATCTTAGCTGCGGCGAATCTCTCGAAC
CGTTATATACAGGACCGTTTCCTTCCCGATAAAGCAATTGACTTACTGGATGAAGCGGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGATATCAAGAAACGTATTGAGCAAGCAGAAGTACAAAAAAATGAAGCAATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGGGAGCTTCAAAGTCATGAGATTTCAGATACAGAT
ATGCCAAATATCACAGAAAAAGATATAGAAGCAATCGTTGAAGAAAAAACACATATTCCTGTGGGTGATTTGAAAGAAAA
AGAGCAAACACAGCTGATCAATTTGGCTGAGGACTTGAAAGAACATGTTATTGGACAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCACGTGTCGGACTTGGAAAACCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGTAAGACTGAACTCGCTAAACAATTAGCTTATGAGCTCTTTGGCTCAAGAGATAGTATGATCCGCTTTGATAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCGCCTCCAGGATATGTAGGGTACGAGGAAGCAGGTC
AGCTGACAGAACGTGTCCGCCGTAACCCGTACAGCTTAATTTTATTGGATGAGATTGAGAAAGCACACCCTGATGTAATG
CATATGTTCTTGCAGATTCTTGATGACGGGCGTTTGACAGATGCACAAGGGCGCACAGTTTCCTTCAAAGATGCAATCAT
CATTATGACCTCAAATGCGGGGACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGTCGTACGAATT
CAGTGCTTGGGGAACTCGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTCAATACTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGACCTGGGTTATGATCCGAAAATGGGAGCACGCCCATTGCGTCGTA
CCATCCAAGATAATATCGAGGACGCTATTGCAGATTTTTACATTGAGCATCCTGAGTATAAAGAGTTACTTGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAGGACACAGCGGATACATCTGATAATGAAGATGAAGA
GAAATAA
ATGCTCTGCCAAAATTGTAAAATAAATGAAGCGACAATTCACCTTTATACGAATGTGAATGGACAACGTAAGCAAGTGGA
TTTATGCCAAAATTGCTATCAAATTATGAAATCAGGAGGTCAAGAAAGCTTGTTTGCTGGGGCGACAAATATTTCTAATA
ATGATGACCCATTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGACGGACAATGACACCTCCA
ACACAAGCTGGAGGTCGAGGTCCAGGAGGACCACAAAATCCTCGTGGAGGTCAAGCACCTAAAGGACTTCTCGAAGAGTT
CGGAGTCAATATCACAGATGCCGCACGCCGTGGAGAAATTGATCCTGTTATTGGGCGAGATTCTGAAATTACACGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCAGGTGTTGGTAAAACAGCAGTTGTTGAA
GGGTTAGCCCAAAAAATCGTTGATGGTGATGTACCACAAAAATTGCAAAATAAAGAAGTTATACGTCTTGATGTTGTTAG
CCTCGTCCAAGGTACTGGTGTACGTGGGCAATTTGAAGAACGTATGCAAAAGCTGATGGAAGAGATTCGTAAACGCGATG
ATGTTATCCTCTTCATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCAGCAGGTGATGGCAATATGGATGCAGGAAAT
ATTCTAAAACCAGCTTTGGCGCGTGGTGAACTACAACTTGTTGGGGCAACAACACTCAATGAATATAGAATTATCGAAAA
AGACGCGGCACTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCCTCTGTAGATGAGACCATTACGATTTTACGTG
GGATTCAAAAACGCTATGAAGACTATCATCATGTGAAATATTCAGATGAAGCAATCTTAGCTGCGGCGAATCTCTCGAAC
CGTTATATACAGGACCGTTTCCTTCCCGATAAAGCAATTGACTTACTGGATGAAGCGGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGATATCAAGAAACGTATTGAGCAAGCAGAAGTACAAAAAAATGAAGCAATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGGGAGCTTCAAAGTCATGAGATTTCAGATACAGAT
ATGCCAAATATCACAGAAAAAGATATAGAAGCAATCGTTGAAGAAAAAACACATATTCCTGTGGGTGATTTGAAAGAAAA
AGAGCAAACACAGCTGATCAATTTGGCTGAGGACTTGAAAGAACATGTTATTGGACAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCACGTGTCGGACTTGGAAAACCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGTAAGACTGAACTCGCTAAACAATTAGCTTATGAGCTCTTTGGCTCAAGAGATAGTATGATCCGCTTTGATAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCGCCTCCAGGATATGTAGGGTACGAGGAAGCAGGTC
AGCTGACAGAACGTGTCCGCCGTAACCCGTACAGCTTAATTTTATTGGATGAGATTGAGAAAGCACACCCTGATGTAATG
CATATGTTCTTGCAGATTCTTGATGACGGGCGTTTGACAGATGCACAAGGGCGCACAGTTTCCTTCAAAGATGCAATCAT
CATTATGACCTCAAATGCGGGGACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGTCGTACGAATT
CAGTGCTTGGGGAACTCGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTCAATACTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGACCTGGGTTATGATCCGAAAATGGGAGCACGCCCATTGCGTCGTA
CCATCCAAGATAATATCGAGGACGCTATTGCAGATTTTTACATTGAGCATCCTGAGTATAAAGAGTTACTTGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAGGACACAGCGGATACATCTGATAATGAAGATGAAGA
GAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
86.631 |
100 |
0.866 |
| clpE | Streptococcus mutans UA159 |
77.543 |
100 |
0.785 |
| clpE | Streptococcus pneumoniae TIGR4 |
77.702 |
97.727 |
0.759 |
| clpE | Streptococcus pneumoniae Rx1 |
77.702 |
97.727 |
0.759 |
| clpE | Streptococcus pneumoniae D39 |
77.702 |
97.727 |
0.759 |
| clpE | Streptococcus pneumoniae R6 |
77.702 |
97.727 |
0.759 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
51.286 |
88.369 |
0.453 |
| clpC | Streptococcus pneumoniae D39 |
46.19 |
85.963 |
0.397 |
| clpC | Streptococcus pneumoniae Rx1 |
46.19 |
85.963 |
0.397 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.034 |
85.963 |
0.396 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.961 |
81.952 |
0.393 |
| clpC | Streptococcus mutans UA159 |
46.688 |
82.754 |
0.386 |
| clpC | Streptococcus thermophilus LMD-9 |
46.006 |
83.69 |
0.385 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.645 |
82.888 |
0.378 |