Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HV95_RS07780 Genome accession   NZ_CP008864
Coordinates   1647171..1647665 (+) Length   164 a.a.
NCBI ID   WP_003292123.1    Uniprot ID   A0ABY1WHY7
Organism   Pseudomonas aeruginosa strain W60856     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1642171..1652665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV95_RS07765 (HV95_01345) - 1642896..1643330 (+) 435 WP_023083166.1 TIGR03751 family conjugal transfer lipoprotein -
  HV95_RS07770 (HV95_01350) - 1643330..1646218 (+) 2889 WP_031689768.1 conjugative transfer ATPase -
  HV95_RS07775 (HV95_01355) - 1646232..1646975 (+) 744 WP_019485626.1 DsbA family protein -
  HV95_RS07780 (HV95_01360) radC 1647171..1647665 (+) 495 WP_003292123.1 RadC family protein Machinery gene
  HV95_RS07785 (HV95_01365) - 1647934..1649094 (+) 1161 WP_019486741.1 hypothetical protein -
  HV95_RS07790 (HV95_01370) - 1649103..1651352 (+) 2250 WP_196495448.1 Mov34/MPN/PAD-1 family protein -
  HV95_RS07795 (HV95_01375) comEC 1651354..1652232 (+) 879 WP_019486743.1 ComEC/Rec2 family competence protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17848.54 Da        Isoelectric Point: 6.6460

>NTDB_id=109714 HV95_RS07780 WP_003292123.1 1647171..1647665(+) (radC) [Pseudomonas aeruginosa strain W60856]
MSLVIADSRPESLTLIAAQHEDWIIRQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAFE
PLFKGTVDQTSVYPRVVVQRALALNASALILAHQHPSGNTEPSAADRAITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=109714 HV95_RS07780 WP_003292123.1 1647171..1647665(+) (radC) [Pseudomonas aeruginosa strain W60856]
ATGTCTCTTGTCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCGGCA
GGCCATCACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCAGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC
GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTGCTCGCCTTCGAG
CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTGGTCCAGCGTGCGCTGGCGCTCAACGCTTC
GGCGCTGATCCTGGCGCATCAGCATCCCTCGGGGAACACCGAGCCCTCGGCCGCTGATCGTGCGATCACCGAGCGGCTGA
AGAGCGCCCTGGCCACCGTCGATGTCCGGGTACTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTGTTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.26

89.024

0.421

Multiple sequence alignment