Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACMZOT_RS22360 Genome accession   NZ_CP180632
Coordinates   4604085..4604714 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CUPS TF 6/1_01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4599085..4609714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZOT_RS22340 (ACMZOT_22340) ycbZ 4599487..4601247 (-) 1761 WP_000156526.1 AAA family ATPase -
  ACMZOT_RS22345 (ACMZOT_22345) matP 4601433..4601885 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACMZOT_RS22350 (ACMZOT_22350) ompA 4601961..4603001 (-) 1041 WP_000750416.1 porin OmpA -
  ACMZOT_RS22355 (ACMZOT_22355) sulA 4603358..4603867 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACMZOT_RS22360 (ACMZOT_22360) sxy/tfoX 4604085..4604714 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACMZOT_RS22365 (ACMZOT_22365) yccS 4604677..4606839 (-) 2163 WP_000875020.1 YccS family putative transporter -
  ACMZOT_RS22370 (ACMZOT_22370) yccF 4606849..4607295 (-) 447 WP_001261231.1 YccF domain-containing protein -
  ACMZOT_RS22375 (ACMZOT_22375) helD 4607418..4609472 (+) 2055 WP_110101772.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1097124 ACMZOT_RS22360 WP_000839153.1 4604085..4604714(+) (sxy/tfoX) [Escherichia coli strain CUPS TF 6/1_01]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1097124 ACMZOT_RS22360 WP_000839153.1 4604085..4604714(+) (sxy/tfoX) [Escherichia coli strain CUPS TF 6/1_01]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment