Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACM28P_RS06605 Genome accession   NZ_CP180627
Coordinates   1309687..1311483 (+) Length   598 a.a.
NCBI ID   WP_150399668.1    Uniprot ID   -
Organism   Lactobacillus crispatus strain T31e     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304687..1316483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM28P_RS06580 (ACM28P_06580) - 1305588..1305968 (-) 381 WP_061205117.1 hypothetical protein -
  ACM28P_RS06585 (ACM28P_06585) - 1306113..1306664 (+) 552 WP_005722451.1 GNAT family N-acetyltransferase -
  ACM28P_RS06590 (ACM28P_06590) - 1306979..1307536 (+) 558 WP_223876070.1 PBECR4 domain-containing protein -
  ACM28P_RS06595 (ACM28P_06595) - 1307533..1308222 (-) 690 WP_416038031.1 DUF554 domain-containing protein -
  ACM28P_RS06600 (ACM28P_06600) - 1308288..1309520 (-) 1233 WP_416038032.1 LCP family protein -
  ACM28P_RS06605 (ACM28P_06605) pepF 1309687..1311483 (+) 1797 WP_150399668.1 oligoendopeptidase F Regulator
  ACM28P_RS06610 (ACM28P_06610) - 1311512..1312156 (-) 645 WP_416038033.1 bacteriocin immunity protein -
  ACM28P_RS06615 (ACM28P_06615) - 1312423..1313628 (+) 1206 WP_416038034.1 IS110 family transposase -
  ACM28P_RS06620 (ACM28P_06620) - 1313881..1315163 (+) 1283 Protein_1285 ISL3 family transposase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67906.81 Da        Isoelectric Point: 4.7004

>NTDB_id=1097086 ACM28P_RS06605 WP_150399668.1 1309687..1311483(+) (pepF) [Lactobacillus crispatus strain T31e]
MAIPNRNEVPEELKWDLTRIFKNDEEWEQAYAAAQEKVDQLGELKGTLAKSGKDLYEGLTKILAVKREVENIYVYATMSS
DVDTANSHYLGYVSRVQSLANQFEAATSFINPEILSIPSDKLAEFKQAEPRLKNYAHYLEMITNKRPHTLPAEQEKLIAD
AGDALGVSENTFNVLTNSDMEYGYVQDDDGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYATYGQFQNSLASTLSGVVKK
HNYNAKAHKYNSARQAALAANGVPEAVYDTLIKEVDSHLDLLHRYVALRKKILGLKDLQMWDMYVPLTGKPSLSYDFEEA
KEVAKKALKPLGEDYLKHVDYIFNNRVIDPVESKGKVTGAYSGGAYDTDPYELLNWEDNIDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDPKTRAFILNYYLDSFKGTLFRQTQFAVFEQFIHEADAKGEPLTA
DTLDDVYGQINQHYYGDSVEPGGDIALEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGSQADRDAYLSFLKAGSSDY
PTEIMKRAGVDMTKPDYLEDAFKTFEKRLNEFESLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=1097086 ACM28P_RS06605 WP_150399668.1 1309687..1311483(+) (pepF) [Lactobacillus crispatus strain T31e]
ATGGCGATACCAAACAGAAATGAAGTCCCAGAAGAACTTAAGTGGGATTTGACCCGAATTTTTAAAAATGATGAAGAATG
GGAACAGGCCTATGCAGCTGCCCAAGAAAAAGTCGATCAACTCGGTGAATTAAAAGGCACATTAGCAAAATCTGGCAAGG
ATTTGTACGAAGGTTTAACCAAGATTTTGGCCGTTAAGCGCGAGGTGGAAAATATTTATGTTTATGCCACCATGTCCAGT
GATGTTGATACGGCTAATTCACATTATCTAGGCTACGTCAGCCGAGTGCAAAGCTTAGCTAACCAATTTGAAGCCGCTAC
TAGTTTTATTAACCCAGAAATCTTGAGCATCCCTAGTGACAAGCTAGCTGAATTTAAGCAAGCTGAACCAAGATTAAAGA
ATTACGCTCACTACTTGGAAATGATTACTAATAAGCGCCCTCACACCCTGCCAGCTGAACAAGAAAAATTAATCGCTGAC
GCTGGGGATGCTTTGGGCGTTTCCGAAAATACTTTTAACGTTTTGACCAATTCCGACATGGAATACGGCTACGTCCAAGA
TGACGATGGCAATATGGAACAATTGTCCGATGGTTTGTACTCATTATTAATTCAATCACAAAACCGTGACGTCAGAAAAG
GTGCCTTTGATACGCTCTATGCCACATACGGTCAATTTCAAAATTCGCTAGCTTCAACCTTGTCCGGCGTTGTGAAAAAG
CACAACTATAACGCTAAAGCACACAAATATAACTCTGCTCGCCAAGCTGCCTTAGCTGCAAATGGCGTACCGGAAGCAGT
TTACGATACTTTAATTAAAGAAGTTGATTCTCACCTTGATCTGCTTCACCGTTATGTTGCTTTGCGTAAGAAGATCTTGG
GCCTAAAAGACCTACAAATGTGGGACATGTATGTGCCGCTAACTGGGAAGCCTTCTCTTTCTTATGACTTTGAAGAAGCG
AAGGAAGTTGCTAAAAAAGCATTGAAGCCATTGGGCGAAGACTACTTAAAGCATGTTGACTACATCTTCAATAACCGCGT
AATCGATCCGGTTGAATCAAAAGGCAAGGTAACTGGGGCTTATTCTGGTGGTGCTTATGATACTGACCCATATGAACTGC
TCAACTGGGAAGATAATATTGACTCACTTTATACCTTAGTTCACGAAACTGGTCACTCCGTGCACTCTTGGTACACCCGT
AATACCCAGCCTTACGTTTATGGCGACTACCCAATCTTCGTTGCCGAAATTGCTTCAACTACTAACGAAAATATTTTGAC
GGAATACTTCTTAGACCACATTACTGATCCCAAGACACGTGCGTTCATCTTGAACTACTACCTCGACTCATTCAAGGGAA
CTTTGTTTAGACAAACGCAATTCGCGGTGTTTGAACAATTTATCCATGAAGCCGACGCTAAGGGTGAACCGCTAACCGCT
GATACCTTGGATGATGTCTATGGTCAAATTAACCAACACTACTACGGCGATAGCGTTGAGCCAGGCGGCGACATTGCCTT
AGAATGGTCACGAATTCCGCACTTCTACTACAACTTCTACGTTTACCAATATGCGACTGGTTTTGCTGCTGCAACGGCTT
TGGCAAATAAGGTGGTGCACGGCAGCCAAGCTGACAGGGATGCCTACCTTAGCTTCTTGAAGGCTGGCTCAAGTGATTAT
CCAACCGAAATCATGAAACGCGCCGGCGTTGATATGACTAAGCCTGATTACTTAGAAGATGCATTCAAGACTTTTGAAAA
GCGGTTGAATGAATTTGAAAGCTTGATTGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.189

99.331

0.518

Multiple sequence alignment