Detailed information NTG1097041

Bioinformatically predicted

Overview

• Name: sxy/tfoX
• Type: Regulator
• Locus tag: ABTZ68_RS11015
• Genome accession: NZ_CP180607
• Coordinates: 2111288..2111917 (-)
• Length: 209 a.a.
• NCBI ID: WP_000839153.1
• Uniprot ID: A0A9Q6Y251
• Organism: Escherichia coli strain PS1Thumoskin9
• Function: positive regulator of competence gene (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	2097422..2111717	2111288..2111917	flank	-429

Gene organization within MGE regions

Location: 2097422..2111917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABTZ68_RS10945 (ABTZ68_010945)	-	2097485..2099923 (+)	2439	WP_268641471.1	exonuclease	-
ABTZ68_RS10950 (ABTZ68_010950)	-	2099990..2100241 (+)	252	WP_000273165.1	DUF4224 domain-containing protein	-
ABTZ68_RS10955 (ABTZ68_010955)	-	2100210..2101229 (+)	1020	WP_024227504.1	tyrosine-type recombinase/integrase	-
ABTZ68_RS10960 (ABTZ68_010960)	yccA	2101637..2102296 (+)	660	WP_000375136.1	FtsH protease modulator YccA	-
ABTZ68_RS10965 (ABTZ68_010965)	tusE	2102387..2102716 (+)	330	WP_000904442.1	sulfurtransferase TusE	-
ABTZ68_RS10970 (ABTZ68_010970)	yccX	2102713..2102991 (-)	279	WP_000048252.1	acylphosphatase	-
ABTZ68_RS10975 (ABTZ68_010975)	rlmI	2103086..2104276 (+)	1191	WP_000116297.1	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	-
ABTZ68_RS10980 (ABTZ68_010980)	hspQ	2104334..2104651 (+)	318	WP_001358373.1	heat shock protein HspQ	-
ABTZ68_RS10985 (ABTZ68_010985)	yccU	2104696..2105109 (-)	414	WP_001301418.1	CoA-binding protein	-
ABTZ68_RS10990 (ABTZ68_010990)	csgI	2105282..2105944 (+)	663	WP_000847783.1	DUF2057 family protein	-
ABTZ68_RS10995 (ABTZ68_010995)	mgsA	2106040..2106498 (+)	459	WP_268641467.1	methylglyoxal synthase	-
ABTZ68_RS11000 (ABTZ68_011000)	helD	2106530..2108584 (-)	2055	WP_000420533.1	DNA helicase IV	-
ABTZ68_RS11005 (ABTZ68_011005)	yccF	2108707..2109153 (+)	447	WP_001261231.1	YccF domain-containing protein	-
ABTZ68_RS11010 (ABTZ68_011010)	yccS	2109163..2111325 (+)	2163	WP_000875044.1	YccS family putative transporter	-
ABTZ68_RS11015 (ABTZ68_011015)	sxy/tfoX	2111288..2111917 (-)	630	WP_000839153.1	CRP-S regulon transcriptional coactivator Sxy	Regulator

Sequence

Protein

• Length: 209 a.a.
• Molecular weight: 24147.02 Da
• Isoelectric Point: 9.2180

>NTDB_id=1097041 ABTZ68_RS11015 WP_000839153.1 2111288..2111917(-) (sxy/tfoX) [Escherichia coli strain PS1Thumoskin9]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide

• Length: 630 bp

>NTDB_id=1097041 ABTZ68_RS11015 WP_000839153.1 2111288..2111917(-) (sxy/tfoX) [Escherichia coli strain PS1Thumoskin9]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

• TfoX N-terminal domain (TfoX_N) (14-106)

• TfoX C-terminal domain (TfoX_C) (116-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sxy/tfoX	Escherichia coli BW25113 strain K-12	100	100	1