Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABTY65_RS13775 Genome accession   NZ_CP180604
Coordinates   2828803..2829387 (-) Length   194 a.a.
NCBI ID   WP_077825616.1    Uniprot ID   -
Organism   Escherichia coli strain PS2Canimalfeces3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2823803..2834387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABTY65_RS13760 (ABTY65_013760) helD 2824045..2826099 (-) 2055 WP_000420536.1 DNA helicase IV -
  ABTY65_RS13765 (ABTY65_013765) yccF 2826222..2826668 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABTY65_RS13770 (ABTY65_013770) yccS 2826678..2828840 (+) 2163 WP_000875015.1 YccS family putative transporter -
  ABTY65_RS13775 (ABTY65_013775) sxy/tfoX 2828803..2829387 (-) 585 WP_077825616.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABTY65_RS13780 (ABTY65_013780) sulA 2829651..2830160 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABTY65_RS13785 (ABTY65_013785) ompA 2830517..2831569 (+) 1053 WP_000750419.1 porin OmpA -
  ABTY65_RS13790 (ABTY65_013790) matP 2831644..2832096 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ABTY65_RS13795 (ABTY65_013795) ycbZ 2832282..2834042 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22258.82 Da        Isoelectric Point: 8.4565

>NTDB_id=1097027 ABTY65_RS13775 WP_077825616.1 2828803..2829387(-) (sxy/tfoX) [Escherichia coli strain PS2Canimalfeces3]
MATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKL
VRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAI
IGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1097027 ABTY65_RS13775 WP_077825616.1 2828803..2829387(-) (sxy/tfoX) [Escherichia coli strain PS2Canimalfeces3]
CTGGCAACGTTGGGCACAATTGAATACCGATCATTGTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGAT
GGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTGAGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGA
CATATAAAAAGTGTGGCCGATCCGTTACCCTCAATTACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTG
GTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCTGAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTT
GCCCAATATGTCTTTTCATCTGGAAGCGATTCTCGGGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGG
CAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAACAGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATT
ATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACGCCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACA
GGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(101-179)

TfoX N-terminal domain (TfoX_N)

(2-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.485

100

0.995

Multiple sequence alignment