Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABTZ31_RS03855 Genome accession   NZ_CP180600
Coordinates   733481..734110 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PS2Canimalfeces12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 728481..739110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABTZ31_RS03840 (ABTZ31_003840) helD 728723..730777 (-) 2055 WP_149488403.1 DNA helicase IV -
  ABTZ31_RS03845 (ABTZ31_003845) yccF 730900..731346 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABTZ31_RS03850 (ABTZ31_003850) yccS 731356..733518 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ABTZ31_RS03855 (ABTZ31_003855) sxy/tfoX 733481..734110 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABTZ31_RS03860 (ABTZ31_003860) sulA 734329..734838 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABTZ31_RS03865 (ABTZ31_003865) ompA 735195..736235 (+) 1041 WP_000750416.1 porin OmpA -
  ABTZ31_RS03870 (ABTZ31_003870) matP 736311..736763 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABTZ31_RS03875 (ABTZ31_003875) ycbZ 736949..738709 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1096992 ABTZ31_RS03855 WP_000839153.1 733481..734110(-) (sxy/tfoX) [Escherichia coli strain PS2Canimalfeces12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1096992 ABTZ31_RS03855 WP_000839153.1 733481..734110(-) (sxy/tfoX) [Escherichia coli strain PS2Canimalfeces12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment