Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABTY30_RS14465 Genome accession   NZ_CP180597
Coordinates   2959971..2960600 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PS3Tanimalfeces2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2954971..2965600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABTY30_RS14450 (ABTY30_014450) helD 2955213..2957267 (-) 2055 WP_000420533.1 DNA helicase IV -
  ABTY30_RS14455 (ABTY30_014455) yccF 2957390..2957836 (+) 447 WP_001261231.1 YccF domain-containing protein -
  ABTY30_RS14460 (ABTY30_014460) yccS 2957846..2960008 (+) 2163 WP_000875044.1 YccS family putative transporter -
  ABTY30_RS14465 (ABTY30_014465) sxy/tfoX 2959971..2960600 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABTY30_RS14470 (ABTY30_014470) sulA 2960819..2961328 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABTY30_RS14475 (ABTY30_014475) ompA 2961685..2962737 (+) 1053 WP_000750419.1 porin OmpA -
  ABTY30_RS14480 (ABTY30_014480) matP 2962812..2963264 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ABTY30_RS14485 (ABTY30_014485) ycbZ 2963450..2965210 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1096983 ABTY30_RS14465 WP_000839153.1 2959971..2960600(-) (sxy/tfoX) [Escherichia coli strain PS3Tanimalfeces2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1096983 ABTY30_RS14465 WP_000839153.1 2959971..2960600(-) (sxy/tfoX) [Escherichia coli strain PS3Tanimalfeces2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment