Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACM2W1_RS15320 Genome accession   NZ_CP180593
Coordinates   3268242..3268877 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 51     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3263242..3273877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM2W1_RS15305 - 3263951..3265195 (+) 1245 WP_019485501.1 lipoprotein-releasing ABC transporter permease subunit -
  ACM2W1_RS15310 - 3265280..3265813 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  ACM2W1_RS15315 comA 3265944..3268169 (+) 2226 WP_023085388.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACM2W1_RS15320 exbB 3268242..3268877 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACM2W1_RS15325 - 3268874..3269314 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  ACM2W1_RS15330 lpxK 3269314..3270312 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  ACM2W1_RS15335 - 3270350..3270535 (+) 186 WP_003091157.1 Trm112 family protein -
  ACM2W1_RS15340 kdsB 3270535..3271299 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACM2W1_RS15345 - 3271299..3271763 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  ACM2W1_RS15350 murB 3271760..3272779 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=1096886 ACM2W1_RS15320 WP_003091163.1 3268242..3268877(+) (exbB) [Pseudomonas aeruginosa strain 51]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1096886 ACM2W1_RS15320 WP_003091163.1 3268242..3268877(+) (exbB) [Pseudomonas aeruginosa strain 51]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment