Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACK2OW_RS12740 Genome accession   NZ_CP180575
Coordinates   2370817..2371395 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain K3C     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2365817..2376395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS12715 (ACK2OW_12715) - 2366329..2366844 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  ACK2OW_RS12720 (ACK2OW_12720) - 2367085..2367711 (-) 627 Protein_2514 protoglobin domain-containing protein -
  ACK2OW_RS12725 (ACK2OW_12725) comW 2367766..2369295 (-) 1530 WP_411225590.1 FAD-dependent oxidoreductase -
  ACK2OW_RS12730 (ACK2OW_12730) yhxC 2369407..2370264 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ACK2OW_RS12735 (ACK2OW_12735) yhzC 2370292..2370525 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ACK2OW_RS12740 (ACK2OW_12740) comK 2370817..2371395 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  ACK2OW_RS12745 (ACK2OW_12745) yhxD 2371441..2372340 (-) 900 WP_032725347.1 SDR family oxidoreductase -
  ACK2OW_RS12750 (ACK2OW_12750) yhjA 2372557..2372826 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  ACK2OW_RS12755 (ACK2OW_12755) yhjB 2372869..2374338 (-) 1470 WP_049140687.1 sodium:solute symporter family protein -
  ACK2OW_RS12760 (ACK2OW_12760) yhjC 2374335..2374535 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ACK2OW_RS12765 (ACK2OW_12765) - 2374734..2375105 (-) 372 WP_014476361.1 hypothetical protein -
  ACK2OW_RS12770 (ACK2OW_12770) yhjE 2375257..2375880 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  ACK2OW_RS12775 (ACK2OW_12775) lepB 2375882..2376388 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=1096787 ACK2OW_RS12740 WP_029317573.1 2370817..2371395(+) (comK) [Bacillus subtilis strain K3C]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1096787 ACK2OW_RS12740 WP_029317573.1 2370817..2371395(+) (comK) [Bacillus subtilis strain K3C]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTACTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment