Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACK2OW_RS04930 Genome accession   NZ_CP180575
Coordinates   841216..841962 (-) Length   248 a.a.
NCBI ID   WP_163116893.1    Uniprot ID   -
Organism   Bacillus subtilis strain K3C     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 836216..846962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS04905 (ACK2OW_04905) mreC 836622..837494 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACK2OW_RS04910 (ACK2OW_04910) mreB 837525..838538 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACK2OW_RS04915 (ACK2OW_04915) radC 838630..839325 (-) 696 WP_003246034.1 RadC family protein -
  ACK2OW_RS04920 (ACK2OW_04920) maf 839362..839931 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ACK2OW_RS04925 (ACK2OW_04925) spoIIB 840084..841082 (-) 999 WP_133954274.1 stage II sporulation protein SpoIIB -
  ACK2OW_RS04930 (ACK2OW_04930) comC 841216..841962 (-) 747 WP_163116893.1 prepilin peptidase Machinery gene
  ACK2OW_RS04935 (ACK2OW_04935) folC 842103..843395 (-) 1293 WP_416042567.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACK2OW_RS04940 (ACK2OW_04940) valS 843455..846097 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  ACK2OW_RS04945 (ACK2OW_04945) - 846545..846736 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26353.00 Da        Isoelectric Point: 9.6811

>NTDB_id=1096759 ACK2OW_RS04930 WP_163116893.1 841216..841962(-) (comC) [Bacillus subtilis strain K3C]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGPSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWCAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGVAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1096759 ACK2OW_RS04930 WP_163116893.1 841216..841962(-) (comC) [Bacillus subtilis strain K3C]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCCCGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTGTGCAGGCCTGCTAGGTGCGGCAGCTGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGTGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTGGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984

Multiple sequence alignment