Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACK2OW_RS00355 Genome accession   NZ_CP180575
Coordinates   82596..83726 (+) Length   376 a.a.
NCBI ID   WP_416042458.1    Uniprot ID   -
Organism   Bacillus subtilis strain K3C     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 75835..92978 82596..83726 within 0


Gene organization within MGE regions


Location: 75835..92978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS00305 (ACK2OW_00305) yozV 75835..76074 (-) 240 WP_014477028.1 TM2 domain-containing protein -
  ACK2OW_RS00310 (ACK2OW_00310) yobD 76245..76583 (+) 339 WP_015251936.1 helix-turn-helix domain-containing protein -
  ACK2OW_RS00315 (ACK2OW_00315) - 76618..77040 (-) 423 WP_031315571.1 hypothetical protein -
  ACK2OW_RS00320 (ACK2OW_00320) - 77292..77456 (-) 165 WP_021481433.1 hypothetical protein -
  ACK2OW_RS00325 (ACK2OW_00325) - 78363..78589 (-) 227 Protein_63 helix-turn-helix domain-containing protein -
  ACK2OW_RS00330 (ACK2OW_00330) - 78791..79492 (-) 702 WP_411225484.1 hypothetical protein -
  ACK2OW_RS00335 (ACK2OW_00335) - 80138..80503 (+) 366 WP_029318057.1 hypothetical protein -
  ACK2OW_RS00340 (ACK2OW_00340) - 80684..80978 (+) 295 Protein_66 SOS response-associated peptidase family protein -
  ACK2OW_RS00345 (ACK2OW_00345) - 81231..81605 (+) 375 WP_021481445.1 YoqO family protein -
  ACK2OW_RS00350 (ACK2OW_00350) - 82386..82463 (+) 78 WP_227057947.1 phage holin -
  ACK2OW_RS00355 (ACK2OW_00355) rapC 82596..83726 (+) 1131 WP_416042458.1 tetratricopeptide repeat protein Regulator
  ACK2OW_RS00360 (ACK2OW_00360) - 83716..83859 (+) 144 WP_153801665.1 hypothetical protein -
  ACK2OW_RS00365 (ACK2OW_00365) - 84013..84213 (-) 201 WP_021481449.1 hypothetical protein -
  ACK2OW_RS00370 (ACK2OW_00370) - 84435..84809 (-) 375 Protein_72 UV damage repair protein UvrX -
  ACK2OW_RS00375 (ACK2OW_00375) - 84807..84962 (-) 156 Protein_73 T7SS effector LXG polymorphic toxin -
  ACK2OW_RS00380 (ACK2OW_00380) yobM 85063..85620 (-) 558 WP_120028151.1 SMI1/KNR4 family protein -
  ACK2OW_RS00385 (ACK2OW_00385) aoxN 85747..87183 (+) 1437 WP_416042459.1 flavin monoamine oxidase family protein -
  ACK2OW_RS00390 (ACK2OW_00390) csaA 87433..87765 (-) 333 WP_014480003.1 chaperone CsaA -
  ACK2OW_RS00395 (ACK2OW_00395) yobQ 87830..88555 (-) 726 WP_072592544.1 helix-turn-helix domain-containing protein -
  ACK2OW_RS00400 (ACK2OW_00400) yobR 88570..89313 (-) 744 WP_169037875.1 GNAT family N-acetyltransferase -
  ACK2OW_RS00405 (ACK2OW_00405) yobS 89391..89966 (-) 576 WP_101502351.1 TetR/AcrR family transcriptional regulator -
  ACK2OW_RS00410 (ACK2OW_00410) yobT 89972..90673 (-) 702 WP_169037874.1 MBL fold metallo-hydrolase -
  ACK2OW_RS00415 (ACK2OW_00415) yobU 90750..91232 (-) 483 WP_169037873.1 GyrI-like domain-containing protein -
  ACK2OW_RS00420 (ACK2OW_00420) yobV 91286..92227 (-) 942 WP_416042460.1 helix-turn-helix transcriptional regulator -
  ACK2OW_RS00425 (ACK2OW_00425) csk22 92433..92978 (+) 546 WP_014480010.1 mother cell-specific sporulation protein Csk22 -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=1096738 ACK2OW_RS00355 WP_416042458.1 82596..83726(+) (rapC) [Bacillus subtilis strain K3C]
MEQLIPSSTVGVKINEWYKYLRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1096738 ACK2OW_RS00355 WP_416042458.1 82596..83726(+) (rapC) [Bacillus subtilis strain K3C]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACCTACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

44.855

100

0.452

Multiple sequence alignment