Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   ABWV32_RS04705 Genome accession   NZ_AP031467
Coordinates   959075..960121 (+) Length   348 a.a.
NCBI ID   WP_002435929.1    Uniprot ID   A0A0S4MEI3
Organism   Staphylococcus capitis strain NBRC 115779     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 954075..965121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWV32_RS04675 (SKB0123_09550) - 954331..955056 (+) 726 WP_002453605.1 type 1 glutamine amidotransferase -
  ABWV32_RS04680 (SKB0123_09560) - 955288..955830 (+) 543 WP_002453604.1 hypothetical protein -
  ABWV32_RS04685 (SKB0123_09570) - 955913..956902 (-) 990 WP_049389121.1 aromatic acid exporter family protein -
  ABWV32_RS04690 (SKB0123_09580) map 957076..957831 (+) 756 WP_002453602.1 type I methionyl aminopeptidase -
  ABWV32_RS04695 (SKB0123_09590) - 957976..958362 (+) 387 WP_002453601.1 hypothetical protein -
  ABWV32_RS04700 (SKB0123_09600) liaF 958377..959078 (+) 702 WP_002453600.1 cell wall-active antibiotics response protein LiaF -
  ABWV32_RS04705 (SKB0123_09610) vraS 959075..960121 (+) 1047 WP_002435929.1 sensor histidine kinase Regulator
  ABWV32_RS04710 (SKB0123_09620) vraR 960111..960740 (+) 630 WP_002453599.1 two-component system response regulator VraR Regulator
  ABWV32_RS04715 (SKB0123_09630) - 960806..962059 (-) 1254 WP_353305017.1 YihY/virulence factor BrkB family protein -
  ABWV32_RS04720 (SKB0123_09640) - 962396..962680 (-) 285 WP_002435890.1 hypothetical protein -
  ABWV32_RS04725 (SKB0123_09650) - 962687..963151 (-) 465 WP_002435947.1 low molecular weight protein-tyrosine-phosphatase -
  ABWV32_RS04730 (SKB0123_09660) - 963292..963498 (+) 207 WP_002435959.1 DUF1128 domain-containing protein -
  ABWV32_RS04735 (SKB0123_09670) - 963512..964753 (+) 1242 WP_002453597.1 aminopeptidase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40136.57 Da        Isoelectric Point: 6.0600

>NTDB_id=109671 ABWV32_RS04705 WP_002435929.1 959075..960121(+) (vraS) [Staphylococcus capitis strain NBRC 115779]
MNHYLRAIGSMLILVYSMLTAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNILIILLCIIVGSVLAYKINQQNDWLKS
QIERSIEGETVGINDQNLELYSETLEIYHTLVPLNQELHRLRMKTQNMTNENYNMNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESKLEPPLDQQIPVLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVIDLQKKVPMKVVHEI
QDFKVPKGIEDHLFRITQEAISNTLRHSNGSKVTVELFNKEDYLLLRIQDNGKGFNVDEKFEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEDESNGD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=109671 ABWV32_RS04705 WP_002435929.1 959075..960121(+) (vraS) [Staphylococcus capitis strain NBRC 115779]
ATGAATCACTACTTGAGAGCAATTGGTTCAATGCTAATACTTGTATATAGCATGCTAACTGCTTTTTTATTCATTGATAA
GGTGTTCGTCAATATTATTTATTTTCAAGGGATGTTTTACACCCAAATTTTTGGAATACCAGTATTTTTATTCCTAAATA
TATTAATCATCTTACTATGTATTATCGTTGGCTCTGTGTTAGCGTATAAAATCAATCAACAAAATGATTGGCTTAAGTCA
CAAATTGAAAGGTCTATTGAAGGTGAAACAGTAGGCATAAATGATCAAAACCTAGAGTTATACAGTGAAACGTTAGAAAT
TTACCATACTTTAGTTCCTTTAAATCAAGAATTACACCGATTGAGAATGAAAACGCAGAATATGACCAATGAAAATTATA
ATATGAATGATGTAAAAGTGAAGAAAATTATTGAAGACGAACGTCAACGTTTAGCAAGAGAACTACATGACTCAGTTAGT
CAGCAACTATTTGCAGCAAGTATGATGTTGTCAGCGATTAAAGAGTCAAAATTAGAACCACCTTTAGACCAACAAATACC
TGTACTAGAGAAGATGGTTCAAGACTCTCAGCTCGAAATGAGAGCATTATTATTACATCTAAGACCTATTGGTTTGAAAG
ACAAATCATTAGGAGAGGGTATTAAAGATTTAGTCATTGATCTTCAAAAGAAAGTCCCTATGAAAGTTGTTCATGAAATT
CAAGATTTCAAAGTACCAAAAGGGATAGAAGATCATCTGTTTAGAATCACTCAAGAGGCTATTTCTAATACATTACGACA
CTCTAATGGTTCTAAGGTAACAGTTGAATTATTTAATAAAGAAGATTATTTACTACTTAGAATTCAAGATAATGGTAAAG
GTTTTAATGTAGATGAAAAATTTGAACAGAGTTATGGATTAAAAAATATGAGAGAACGTGCTTTAGAGATTGGTGCCACA
TTCCATATCGTATCGTTACCGGATTCAGGTACGAGAATAGAAGTTAAAGCACCATTGAATAAGGAGGATGAATCAAATGG
CGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0S4MEI3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

93.586

98.563

0.922


Multiple sequence alignment