Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ABWV32_RS04260 Genome accession   NZ_AP031467
Coordinates   874269..874985 (-) Length   238 a.a.
NCBI ID   WP_002453658.1    Uniprot ID   -
Organism   Staphylococcus capitis strain NBRC 115779     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 869269..879985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWV32_RS04245 (SKB0123_08720) - 870584..871534 (+) 951 WP_049389267.1 LacI family DNA-binding transcriptional regulator -
  ABWV32_RS04250 (SKB0123_08730) - 871763..873238 (+) 1476 WP_353305006.1 sucrose-6-phosphate hydrolase -
  ABWV32_RS04255 (SKB0123_08740) - 873245..874204 (+) 960 WP_002453659.1 carbohydrate kinase -
  ABWV32_RS04260 (SKB0123_08750) agrA 874269..874985 (-) 717 WP_002453658.1 quorum-sensing response regulator AgrA Regulator
  ABWV32_RS04265 (SKB0123_08760) agrC 875001..876290 (-) 1290 WP_002453657.1 quorum-sensing sensor histidine kinase AgrC -
  ABWV32_RS04270 (SKB0123_08770) agrD 876312..876452 (-) 141 WP_029625762.1 cyclic lactone autoinducer peptide AgrD -
  ABWV32_RS04275 (SKB0123_08780) - 876455..877021 (-) 567 WP_002453656.1 accessory gene regulator AgrB -
  ABWV32_RS04280 - 877338..877415 (+) 78 WP_100209060.1 delta-lysin family phenol-soluble modulin -
  ABWV32_RS04285 (SKB0123_08790) - 877785..878570 (-) 786 WP_002453655.1 carbon-nitrogen family hydrolase -
  ABWV32_RS04290 (SKB0123_08800) - 878672..879298 (-) 627 WP_002453654.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27856.88 Da        Isoelectric Point: 5.6554

>NTDB_id=109670 ABWV32_RS04260 WP_002453658.1 874269..874985(-) (agrA) [Staphylococcus capitis strain NBRC 115779]
MKIFVCEDDPRQRENMVSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADMNGIKLGSKIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=109670 ABWV32_RS04260 WP_002453658.1 874269..874985(-) (agrA) [Staphylococcus capitis strain NBRC 115779]
ATGAAGATATTCGTTTGCGAAGACGATCCTAGACAAAGAGAAAATATGGTTTCAATTATCAAGAATTACATCATGATTGA
AGAAAAACCTATGGAACTAGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGACATTG
GTTGCTATTTCTTGGATATTCAATTAGAAGCTGACATGAACGGTATTAAACTTGGTAGTAAAATTCGTAAACATGATCCA
GTCGGCAACATTATTTTTGTTACAAGTCACAGCGAACTTACATATTTAACATTTGTTTATAAAGTAGCTGCTATGGACTT
CATTTTCAAAGATGATCCTTCAGAATTAAAAACAAGAATTATTGACTGTCTTGAAACAGCTCATACACGTCTTAAGTTGC
TATCTAAAGAAAGTAATGTCGAAACAATTGAATTAAAGCGTGGCAGTAACTCTGTATATGTTCAATATGATGATATCATG
TTCTTCGAATCTTCAACTAAGTCTCACAGATTAATCGCACACTTAGATAACCGTCAAATAGAATTTTACGGCAATCTTAA
AGAGTTAGCTCAACTTGATGAACGTTTCTTTAGATGTCATAACAGCTTTGTGGTGAATAGACATAATATTGAATCTATAG
ATTCTAAAGAGCGTATTGTTTATTTCAAAAATGGTGAAAATTGTTTCGCGTCTGTGCGTAATGTTAAAAAAATCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

90.756

100

0.908

Multiple sequence alignment