Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACM0CY_RS01930 Genome accession   NZ_CP180570
Coordinates   411152..412591 (+) Length   479 a.a.
NCBI ID   WP_415870552.1    Uniprot ID   -
Organism   Aeromonas caviae strain BJ093     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406152..417591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0CY_RS01900 mlaF 406730..407530 (-) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -
  ACM0CY_RS01905 - 407737..408732 (+) 996 WP_124812737.1 KpsF/GutQ family sugar-phosphate isomerase -
  ACM0CY_RS01910 kdsC 408732..409286 (+) 555 WP_124812735.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ACM0CY_RS01915 lptC 409283..409843 (+) 561 WP_039040473.1 LPS export ABC transporter periplasmic protein LptC -
  ACM0CY_RS01920 lptA 409830..410348 (+) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  ACM0CY_RS01925 lptB 410361..411086 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  ACM0CY_RS01930 rpoN/rpoN1 411152..412591 (+) 1440 WP_415870552.1 RNA polymerase factor sigma-54 Machinery gene
  ACM0CY_RS01935 hpf 412612..412899 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  ACM0CY_RS01940 ptsN 412902..413348 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACM0CY_RS01945 rapZ 413389..414255 (+) 867 WP_010675869.1 RNase adapter RapZ -
  ACM0CY_RS01950 npr 414276..414548 (+) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  ACM0CY_RS01955 - 414564..416468 (-) 1905 WP_415870553.1 BglG family transcription antiterminator -
  ACM0CY_RS01960 dagF 416572..417312 (-) 741 WP_415870554.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53749.52 Da        Isoelectric Point: 4.3728

>NTDB_id=1096689 ACM0CY_RS01930 WP_415870552.1 411152..412591(+) (rpoN/rpoN1) [Aeromonas caviae strain BJ093]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQETQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=1096689 ACM0CY_RS01930 WP_415870552.1 411152..412591(+) (rpoN/rpoN1) [Aeromonas caviae strain BJ093]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAACTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCGCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ACTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCCCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment