Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACM0CW_RS18960 Genome accession   NZ_CP180569
Coordinates   4067533..4068972 (-) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain BJ042     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4062533..4073972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0CW_RS18930 dagF 4062812..4063552 (+) 741 WP_216944762.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  ACM0CW_RS18935 - 4063656..4065560 (+) 1905 WP_216944763.1 BglG family transcription antiterminator -
  ACM0CW_RS18940 npr 4065576..4065848 (-) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  ACM0CW_RS18945 rapZ 4065869..4066735 (-) 867 WP_010675869.1 RNase adapter RapZ -
  ACM0CW_RS18950 ptsN 4066776..4067222 (-) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ACM0CW_RS18955 hpf 4067225..4067512 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  ACM0CW_RS18960 rpoN/rpoN1 4067533..4068972 (-) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  ACM0CW_RS18965 lptB 4069038..4069763 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  ACM0CW_RS18970 lptA 4069776..4070294 (-) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  ACM0CW_RS18975 lptC 4070281..4070841 (-) 561 WP_216944764.1 LPS export ABC transporter periplasmic protein LptC -
  ACM0CW_RS18980 kdsC 4070838..4071392 (-) 555 WP_042864828.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ACM0CW_RS18985 - 4071392..4072387 (-) 996 WP_216944765.1 KpsF/GutQ family sugar-phosphate isomerase -
  ACM0CW_RS18990 mlaF 4072594..4073394 (+) 801 WP_216944766.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=1096683 ACM0CW_RS18960 WP_039040474.1 4067533..4068972(-) (rpoN/rpoN1) [Aeromonas caviae strain BJ042]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=1096683 ACM0CW_RS18960 WP_039040474.1 4067533..4068972(-) (rpoN/rpoN1) [Aeromonas caviae strain BJ042]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGTATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGTCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACTCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTACTGGATCTTATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ACTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCTCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment