Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   ACLKMS_RS01200 Genome accession   NZ_CP180533
Coordinates   282912..283808 (+) Length   298 a.a.
NCBI ID   WP_002468753.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain BP21     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 277912..288808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMS_RS01180 (ACLKMS_01180) - 278598..280142 (+) 1545 WP_415918729.1 NAD(P)H-binding protein -
  ACLKMS_RS01185 (ACLKMS_01185) - 280265..281734 (-) 1470 WP_002456720.1 alkaline phosphatase -
  ACLKMS_RS01190 (ACLKMS_01190) - 282031..282210 (+) 180 WP_002456719.1 hypothetical protein -
  ACLKMS_RS01195 (ACLKMS_01195) braR 282241..282906 (+) 666 WP_415918730.1 response regulator transcription factor Regulator
  ACLKMS_RS01200 (ACLKMS_01200) braS 282912..283808 (+) 897 WP_002468753.1 sensor histidine kinase Regulator
  ACLKMS_RS01205 (ACLKMS_01205) - 283919..284668 (+) 750 WP_001830627.1 ABC transporter ATP-binding protein -
  ACLKMS_RS01210 (ACLKMS_01210) - 284670..286682 (+) 2013 WP_070852712.1 ABC transporter permease -
  ACLKMS_RS01215 (ACLKMS_01215) - 286786..287376 (+) 591 WP_002485462.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34874.50 Da        Isoelectric Point: 6.7743

>NTDB_id=1096259 ACLKMS_RS01200 WP_002468753.1 282912..283808(+) (braS) [Staphylococcus epidermidis strain BP21]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEHELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDAQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNQGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=1096259 ACLKMS_RS01200 WP_002468753.1 282912..283808(+) (braS) [Staphylococcus epidermidis strain BP21]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTGTTTTCTTTACCTTTTGATGCATACGTACTAGCAATCAGTATCATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAATGAACATCTTAAAGATAAAGTAGCATATTTAGAACATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAACGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGTCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
TATTTTAACCGATGCACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATTTGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACTGGTATAGGTCTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAGTTGAATCAGGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60.339

98.993

0.597

Multiple sequence alignment