Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   ACLKMS_RS00165 Genome accession   NZ_CP180533
Coordinates   40577..42205 (-) Length   542 a.a.
NCBI ID   WP_248129708.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain BP21     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 40598..49183 40577..42205 flank -1607


Gene organization within MGE regions


Location: 40577..49183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMS_RS00165 (ACLKMS_00165) ccrB 40577..42205 (-) 1629 WP_248129708.1 cassette chromosome recombinase CcrB Machinery gene
  ACLKMS_RS00170 (ACLKMS_00170) ccrA 42227..43576 (-) 1350 WP_002486033.1 cassette chromosome recombinase CcrA Machinery gene
  ACLKMS_RS00175 (ACLKMS_00175) cch1 43810..45597 (-) 1788 WP_049280195.1 cassette chromosome replicative helicase -
  ACLKMS_RS00180 (ACLKMS_00180) ssb 45597..45887 (-) 291 WP_001036438.1 cassette chromosome ssDNA-binding protein -
  ACLKMS_RS00185 (ACLKMS_00185) - 46026..47075 (+) 1050 WP_000613248.1 hypothetical protein -
  ACLKMS_RS00190 (ACLKMS_00190) - 47693..49183 (+) 1491 WP_000554504.1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62667.01 Da        Isoelectric Point: 9.9629

>NTDB_id=1096256 ACLKMS_RS00165 WP_248129708.1 40577..42205(-) (ccrB) [Staphylococcus epidermidis strain BP21]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYD
EVRIKLNNLIKTIEDNPDLTSVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKIFRHVFHNIEKMKKSQLK
ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDTPLDEVLLSTSSLFLPQPFYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=1096256 ACLKMS_RS00165 WP_248129708.1 40577..42205(-) (ccrB) [Staphylococcus epidermidis strain BP21]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTTTCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGATGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAGGTCAAAGATATATACGCTGATCGTGGTA
TTTCAGGTAAATCTATGAACAGACCCGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATCGACTGTGTTATG
GTATACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTGTCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAGATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTTATGGGTCAAACAAGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTACCACTAGGTTATGACAAAATACCAGATAGTAAACACGAGCTAATGATTAACCAACATGAAGCTAATATTGTAAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATTGCCAACGCATTGAATCACAAAGGATATGTCACTAAAA
AGGGGAAACCTTTCAGTATTAGTTCAATCACATACATCTTAGCTAACCCTTTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTTCATGGTAAAGGAACGA
ATCTGCTTACAGGCATTATCCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACACTTAAAGAT
GGGACCAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTAATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTGG
TAGCACGTGTTAATCAAGAAAATCAAGTTGATTGTGCGTCACTTCATCACGATATCGCTTATAAGCAACAACAATATGAT
GAAGTAAGAATCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGGCCGTCGAT
TCAAAAATATGATAAGCAACTTAATGACATTATGAGTCAAATCAATCAACTCAAAAAACAACAAAATGAAGATAAACCCT
CATATAATGCCAAAAAAATTGGGAAAATATTTCGACACGTCTTTCATAATATTGAGAAAATGAAAAAATCTCAACTTAAA
GCACTGTACTTAGCAGTGATTGATCGCATTGATATTAGAAAAGATAGCAATCACAAAAAACAGTTTTATGTAACACTCAA
ACTTGATAATGAAGTAATTAAACAGGTTTTCAATGATACTCCTCTCGACGAAGTGCTCCTTAGCACTTCGTCTTTATTTT
TACCCCAACCTTTTTATTTAACAATATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

92.804

100

0.928

Multiple sequence alignment