Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   ACM0AO_RS14300 Genome accession   NZ_CP180528
Coordinates   2909403..2910008 (-) Length   201 a.a.
NCBI ID   WP_001202371.1    Uniprot ID   A0A716I2X5
Organism   Salmonella enterica subsp. enterica serovar Typhi isolate GIMC1200:Salty24446_2017     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 2904403..2915008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0AO_RS14285 (ACM0AO_14285) helD 2904620..2906674 (-) 2055 WP_000420526.1 DNA helicase IV -
  ACM0AO_RS14290 (ACM0AO_14290) - 2906798..2907244 (+) 447 WP_001261222.1 YccF domain-containing protein -
  ACM0AO_RS14295 (ACM0AO_14295) yccS 2907263..2909416 (+) 2154 WP_000950867.1 YccS family putative transporter -
  ACM0AO_RS14300 (ACM0AO_14300) sxy/tfoX 2909403..2910008 (-) 606 WP_001202371.1 TfoX/Sxy family DNA transformation protein Regulator
  ACM0AO_RS14305 (ACM0AO_14305) sulA 2910225..2910734 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  ACM0AO_RS14310 (ACM0AO_14310) ompA 2911089..2912141 (+) 1053 WP_010989142.1 porin OmpA -
  ACM0AO_RS14315 (ACM0AO_14315) matP 2912213..2912665 (-) 453 WP_000877174.1 macrodomain Ter protein MatP -
  ACM0AO_RS14320 (ACM0AO_14320) - 2912851..2914611 (+) 1761 WP_000156455.1 AAA family ATPase -

Sequence


Protein


Download         Length: 201 a.a.        Molecular weight: 23175.88 Da        Isoelectric Point: 8.1288

>NTDB_id=1096241 ACM0AO_RS14300 WP_001202371.1 2909403..2910008(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhi isolate GIMC1200:Salty24446_2017]
MRALSYDRIYESQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1096241 ACM0AO_RS14300 WP_001202371.1 2909403..2910008(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhi isolate GIMC1200:Salty24446_2017]
ATGAGAGCACTCTCTTATGACAGGATCTATGAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACTGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGTTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A716I2X5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746


Multiple sequence alignment