Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACMZ68_RS16550 Genome accession   NZ_CP180522
Coordinates   3465462..3466103 (-) Length   213 a.a.
NCBI ID   WP_032004890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP5091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3460462..3471103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZ68_RS16530 (ACMZ68_16530) aroK 3461405..3461974 (-) 570 WP_002116987.1 shikimate kinase AroK -
  ACMZ68_RS16535 (ACMZ68_16535) pilQ 3461986..3464112 (-) 2127 WP_069120196.1 type IV pilus secretin PilQ Machinery gene
  ACMZ68_RS16540 (ACMZ68_16540) pilP 3464175..3464702 (-) 528 WP_069120199.1 pilus assembly protein PilP Machinery gene
  ACMZ68_RS16545 (ACMZ68_16545) pilO 3464713..3465465 (-) 753 WP_206216692.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACMZ68_RS16550 (ACMZ68_16550) pilN 3465462..3466103 (-) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  ACMZ68_RS16555 (ACMZ68_16555) pilM 3466103..3467161 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  ACMZ68_RS16560 (ACMZ68_16560) ponA 3467323..3469884 (+) 2562 WP_032036609.1 penicillin-binding protein PBP1a -
  ACMZ68_RS16565 (ACMZ68_16565) rrmA 3469900..3470724 (-) 825 WP_415871452.1 putative RNA methyltransferase -
  ACMZ68_RS16570 (ACMZ68_16570) - 3470727..3471059 (-) 333 WP_002116981.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23907.33 Da        Isoelectric Point: 5.4186

>NTDB_id=1096207 ACMZ68_RS16550 WP_032004890.1 3465462..3466103(-) (pilN) [Acinetobacter pittii strain AP5091]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1096207 ACMZ68_RS16550 WP_032004890.1 3465462..3466103(-) (pilN) [Acinetobacter pittii strain AP5091]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGCCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685

Multiple sequence alignment