Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   ACMZ68_RS01270 Genome accession   NZ_CP180522
Coordinates   265840..266166 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain AP5091     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 260840..271166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZ68_RS01245 (ACMZ68_01245) hemC 261455..262372 (+) 918 WP_057076931.1 hydroxymethylbilane synthase -
  ACMZ68_RS01250 (ACMZ68_01250) hemD 262376..263143 (+) 768 WP_057076928.1 uroporphyrinogen-III synthase -
  ACMZ68_RS01255 (ACMZ68_01255) - 263152..263994 (+) 843 WP_415871623.1 hypothetical protein -
  ACMZ68_RS01260 (ACMZ68_01260) - 264004..265197 (+) 1194 WP_017385883.1 membrane protein -
  ACMZ68_RS01265 (ACMZ68_01265) - 265205..265645 (+) 441 WP_002121251.1 acyl-CoA thioesterase -
  ACMZ68_RS01270 (ACMZ68_01270) hns 265840..266166 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACMZ68_RS01275 (ACMZ68_01275) gspN 266501..267244 (+) 744 WP_002121195.1 type II secretion system protein N -
  ACMZ68_RS01280 (ACMZ68_01280) - 267244..268080 (+) 837 WP_005079413.1 type II secretion system protein N -
  ACMZ68_RS01285 (ACMZ68_01285) gspD 268122..270398 (+) 2277 WP_032005866.1 type II secretion system secretin GspD -
  ACMZ68_RS01290 (ACMZ68_01290) - 270438..271064 (+) 627 WP_042783292.1 FHA domain-containing protein -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1096171 ACMZ68_RS01270 WP_000801427.1 265840..266166(+) (hns) [Acinetobacter pittii strain AP5091]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1096171 ACMZ68_RS01270 WP_000801427.1 265840..266166(+) (hns) [Acinetobacter pittii strain AP5091]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains


Predicted by InterproScan.

(12-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1


Multiple sequence alignment