Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACMZ68_RS01115 Genome accession   NZ_CP180522
Coordinates   233579..235147 (-) Length   522 a.a.
NCBI ID   WP_415871616.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP5091     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 228579..240147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZ68_RS01100 (ACMZ68_01100) gpmI 229391..230938 (+) 1548 WP_415871614.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACMZ68_RS01105 (ACMZ68_01105) ctpA 230954..232138 (+) 1185 WP_069122048.1 S41 family peptidase -
  ACMZ68_RS01110 (ACMZ68_01110) pilR 232142..233554 (-) 1413 WP_415871615.1 sigma-54-dependent transcriptional regulator Regulator
  ACMZ68_RS01115 (ACMZ68_01115) pilS 233579..235147 (-) 1569 WP_415871616.1 sensor histidine kinase Regulator
  ACMZ68_RS01120 (ACMZ68_01120) gacA 235158..235793 (-) 636 WP_002121174.1 response regulator -
  ACMZ68_RS01125 (ACMZ68_01125) pbpG 236006..237052 (+) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACMZ68_RS01130 (ACMZ68_01130) thrC 237159..238298 (-) 1140 WP_002048893.1 threonine synthase -
  ACMZ68_RS01135 (ACMZ68_01135) hom 238353..239654 (-) 1302 WP_002121263.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59106.64 Da        Isoelectric Point: 6.2823

>NTDB_id=1096169 ACMZ68_RS01115 WP_415871616.1 233579..235147(-) (pilS) [Acinetobacter pittii strain AP5091]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDVEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNNFINTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1096169 ACMZ68_RS01115 WP_415871616.1 233579..235147(-) (pilS) [Acinetobacter pittii strain AP5091]
ATGCAATTTCCCCTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGTTTTAAGTTTATTGCAACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCTTTGCTCATAACATTACTTGCAG
TCATTGCGGTTATTTATCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACATGGAATAGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATATTAAAGTTTGATAATTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCGCAACAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGACAACTCTCAGCAAGT
ATTGCACATGAGATCCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTGCTCAAAGACAGTGATGTGGAACAGCA
AAACACTTTGCGCAATATGATTGGCAAGCAAACAAAACGCATTGATAGTATTGTTCAAGACACGTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTGAACTAAACAACTTCATAAATACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTGCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGATTCACCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.828

100

0.948

Multiple sequence alignment