Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACMXYJ_RS25830 Genome accession   NZ_CP180480
Coordinates   5557257..5557892 (-) Length   211 a.a.
NCBI ID   WP_415757453.1    Uniprot ID   -
Organism   Pseudomonas sp. LT1P18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5552257..5562892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYJ_RS25795 - 5552655..5553125 (-) 471 WP_008152370.1 (2Fe-2S)-binding protein -
  ACMXYJ_RS25800 murB 5553369..5554388 (-) 1020 WP_415757449.1 UDP-N-acetylmuramate dehydrogenase -
  ACMXYJ_RS25805 - 5554385..5554849 (-) 465 WP_415757450.1 low molecular weight protein-tyrosine-phosphatase -
  ACMXYJ_RS25810 kdsB 5554849..5555613 (-) 765 WP_415757451.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMXYJ_RS25815 - 5555610..5555795 (-) 186 WP_007945752.1 Trm112 family protein -
  ACMXYJ_RS25820 lpxK 5555819..5556829 (-) 1011 WP_415757452.1 tetraacyldisaccharide 4'-kinase -
  ACMXYJ_RS25825 - 5556829..5557260 (-) 432 WP_109633873.1 ExbD/TolR family protein -
  ACMXYJ_RS25830 exbB 5557257..5557892 (-) 636 WP_415757453.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMXYJ_RS25835 - 5557991..5560229 (-) 2239 Protein_5097 DNA internalization-related competence protein ComEC/Rec2 -
  ACMXYJ_RS25840 - 5560365..5560883 (+) 519 WP_415757454.1 DUF2062 domain-containing protein -
  ACMXYJ_RS25845 - 5561052..5561831 (-) 780 WP_010461900.1 ABC transporter permease -
  ACMXYJ_RS25850 - 5561828..5562760 (-) 933 WP_415757455.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22868.04 Da        Isoelectric Point: 7.3616

>NTDB_id=1096078 ACMXYJ_RS25830 WP_415757453.1 5557257..5557892(-) (exbB) [Pseudomonas sp. LT1P18]
MWELVKSGGWMMIPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVVHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLNGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1096078 ACMXYJ_RS25830 WP_415757453.1 5557257..5557892(-) (exbB) [Pseudomonas sp. LT1P18]
GTGTGGGAATTGGTCAAATCCGGCGGATGGATGATGATACCGATCATTCTGAGTTCCATCGCAGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAACTCAATAAAGACAAACTCAAGGAGCTGCGCGCCAACTCGCCGTTGGGCGAGATCCTGGCTGCTGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATAGAAGAAGCCGCCGCGCGAGTGGTTCACGAGCTCGAACGCTACAT
CAACGCGTTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGTCTGTTGGGGACGGTGCTCGGTATGATCGACATTTTCA
GCGCGTTCATGGGCACGGGCATGGGCACTAACGCTGCGGTGCTGGCCGGTGGTATTTCCAAGGCCCTGATCACCACGGCC
GCGGGCCTGATGGTCGGCATCCCGGCGGTATTCTTCCACCGGTTCCTGCAACGCCGCATCGATGAACTTGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAGGTGGTACAGGGTGACCGTGATGTTGACCTGAATGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment