Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACMXYJ_RS05595 Genome accession   NZ_CP180480
Coordinates   1222131..1223498 (+) Length   455 a.a.
NCBI ID   WP_033054257.1    Uniprot ID   A0A059L927
Organism   Pseudomonas sp. LT1P18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1217131..1228498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYJ_RS05570 - 1217631..1217801 (+) 171 WP_082555883.1 DUF2474 domain-containing protein -
  ACMXYJ_RS05575 - 1217884..1219008 (-) 1125 WP_415759051.1 methyltransferase -
  ACMXYJ_RS05580 - 1219184..1219915 (-) 732 WP_415759052.1 helix-turn-helix transcriptional regulator -
  ACMXYJ_RS05585 - 1220258..1221034 (+) 777 WP_415759053.1 ferredoxin--NADP reductase -
  ACMXYJ_RS05590 mscL 1221081..1221494 (-) 414 WP_033054255.1 large-conductance mechanosensitive channel protein MscL -
  ACMXYJ_RS05595 radA 1222131..1223498 (+) 1368 WP_033054257.1 DNA repair protein RadA Machinery gene
  ACMXYJ_RS05600 - 1223553..1224500 (-) 948 WP_415756263.1 IS110 family transposase -
  ACMXYJ_RS05605 - 1224738..1225106 (-) 369 WP_415759054.1 PilZ domain-containing protein -
  ACMXYJ_RS05610 - 1225265..1227331 (+) 2067 WP_415759055.1 carbon starvation CstA family protein -
  ACMXYJ_RS05615 - 1227346..1227543 (+) 198 WP_008154232.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48801.27 Da        Isoelectric Point: 6.8987

>NTDB_id=1096063 ACMXYJ_RS05595 WP_033054257.1 1222131..1223498(+) (radA) [Pseudomonas sp. LT1P18]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIRTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKVMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1096063 ACMXYJ_RS05595 WP_033054257.1 1222131..1223498(+) (radA) [Pseudomonas sp. LT1P18]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAGTGGGCTGGCCAGTGCGGTGAGTG
CGGGGCCTGGAACACCCTGACTGAAACCATGGTGGAGAGCGGTGGCGCCGCAGCCCCCAGCGGTCGCACCGGCTGGACCG
GTCAACAGGCGCAGATCAGGACCCTTGCCGAAGTCAGCGTCGAAGAGATTCCGCGTTTTTCCACAGCCTCCAGCGAGCTC
GATCGAGTGCTGGGCGGTGGTCTGGTAGACGGTTCGGTGGTGCTGATCGGCGGTGATCCGGGTATCGGCAAATCGACCAT
CCTGCTGCAAACCTTGTGCAACCTCGCCAAAGTCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGCCGTCTCGGTTTGCCTCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGTCAGGAAAAGCCCAAGGTGATGGTGATCGATTCGATTCAGACGATCTTCACCGAGCAACTGCAATCGGCACC
GGGCGGCGTGTCCCAGGTCAGGGAAAGCGCGGCGTTGCTGGTGCGCTATGCGAAGCAGAGCGGCACGGCCATTTTCCTGG
TCGGTCACGTGACGAAAGAAGGTGCATTGGCCGGGCCGCGAGTGCTGGAGCACATGGTCGACACGGTTCTGTATTTCGAA
GGCGAATCCGATGGGCGTTTGCGTTTGCTGCGAGCGGTGAAAAACCGTTTCGGCGCCGTCAACGAACTGGGCGTGTTCGG
TATGACCGACAAGGGGCTGAAAGAAGTCTCCAACCCGTCAGCGATTTTCCTGACCCGTGCGCAGGAAGAAGTGCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGGACGCGGCCGATGCTGGTGGAAGTCCAGGCACTGGTGGATGACAGCCATTTGGCC
AATCCCCGTCGGGTAACGCTGGGGCTGGATCAGAATCGTCTGGCGATGTTGTTGGCGGTGCTGCACCGTCACGGCGGCAT
TCCGACCCACGATCAGGATGTGTTTCTCAACGTGGTTGGCGGGGTGAAGGTGTTGGAAACGGCCTCCGATCTGGCGCTGA
TGGCGGCGGTCATGTCCAGTTTGCGCAACCGGCCACTGCCCCATGATCTGCTGGTGTTCGGCGAGGTGGGGCTTTCCGGC
GAAGTACGCCCGGTGCCGAGTGGCCAGGAGCGCTTGAAAGAGGCTGCCAAACACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAAGAGGCGCCGCCGGGGTTGCAGATTATCGCCGTGACGCGTCTGGAACAGGCGTTGGACGCGCTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(74-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059L927

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment