Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   ACGHT2_RS01755 Genome accession   NZ_AP031455
Coordinates   308685..309731 (+) Length   348 a.a.
NCBI ID   WP_058692738.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 303685..314731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS01740 (K460107A9_02840) - 304952..306607 (+) 1656 WP_013851462.1 peptide ABC transporter substrate-binding protein -
  ACGHT2_RS01745 (K460107A9_02850) - 306717..307631 (+) 915 WP_003063307.1 ABC transporter permease -
  ACGHT2_RS01750 (K460107A9_02860) - 307642..308673 (+) 1032 WP_013851463.1 ABC transporter permease -
  ACGHT2_RS01755 (K460107A9_02870) oppD 308685..309731 (+) 1047 WP_058692738.1 ABC transporter ATP-binding protein Regulator
  ACGHT2_RS01760 (K460107A9_02880) amiF 309731..310660 (+) 930 WP_058692739.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38649.29 Da        Isoelectric Point: 4.8139

>NTDB_id=109597 ACGHT2_RS01755 WP_058692738.1 308685..309731(+) (oppD) [Streptococcus pasteurianus strain k46-0107-A9]
MTEETILQVKNLRVDFHTYAGEIKAIRDVSFDLKEGETLAIVGESGSGKSVTTKTLMGLSASNAEVTGDIDFKGKKLIEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEALKRALELMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDILIADEPTTALDVTIQAQILNLMKQIQKERGSSIVFITHDLGVVAGMADRVAVMYAGKIIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHFAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=109597 ACGHT2_RS01755 WP_058692738.1 308685..309731(+) (oppD) [Streptococcus pasteurianus strain k46-0107-A9]
ATGACTGAAGAAACAATTTTACAAGTTAAAAACCTCCGTGTAGATTTCCATACCTATGCTGGGGAAATTAAAGCTATTCG
TGATGTCAGCTTTGACTTAAAAGAAGGCGAAACGCTTGCCATTGTTGGTGAGTCAGGTTCAGGTAAATCTGTAACAACAA
AAACGTTGATGGGCTTGTCAGCTTCAAATGCAGAAGTTACAGGAGACATCGATTTTAAAGGTAAAAAATTAATAGAATTA
AAAGAAGATGAATGGATTAAGGTTCGTGGAAATGAAATTGCAATGATTTTCCAAGACCCTATGACAAGTCTTGACCCAAC
AATGAAAATTGGTCAACAAATAGCTGAACCAATTATGATTCATGAAAAAGTTTCTAAACAAGAAGCTTTAAAACGTGCTT
TGGAACTCATGAAAAATGTTGGTATTCCAAACGCAGAAGAACATATTAATGATTATCCGCACCAATGGTCAGGTGGTATG
CGTCAACGTGCTGTTATTGCGATTGCCTTGGCAGCAAACCCAGATATTTTGATTGCTGATGAACCTACAACAGCCTTGGA
CGTAACCATTCAAGCACAAATTTTGAATTTGATGAAACAAATTCAAAAAGAACGTGGTTCGTCAATCGTCTTTATCACAC
ATGACCTTGGTGTTGTTGCGGGCATGGCTGATCGTGTTGCCGTTATGTATGCTGGTAAGATTATTGAATATGGAACAGTA
GATGAAGTATTCTATAACCCACAACATCCATATACTTGGGGGCTTTTGAATTCAATGCCAACAACAGATACTGAAGCAGG
AAGTCTTCAATCTATCCCAGGTACACCGCCAGATCTCCTCAATCCACCAAAAGGTGATGCTTTTGCACCACGTAATGAGT
TTGCTTTAGATATTGACTACGAGGAAGAACCACCAATGTTTAAAGTTAGTGATACGCATTTTGCAGCTACATGGTTGTTA
GATGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.403

99.713

0.802
  amiE Streptococcus salivarius strain HSISS4

58.876

97.126

0.572
  amiE Streptococcus thermophilus LMG 18311

58.58

97.126

0.569
  amiE Streptococcus thermophilus LMD-9

58.58

97.126

0.569

Multiple sequence alignment