Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACMX8W_RS19275 Genome accession   NZ_CP180439
Coordinates   3673311..3674000 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain Z-294     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3668311..3679000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX8W_RS19240 (ACMX8W_19240) flgN 3668491..3668973 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ACMX8W_RS19245 (ACMX8W_19245) flgM 3668989..3669255 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACMX8W_RS19250 (ACMX8W_19250) yvyF 3669336..3669755 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACMX8W_RS19255 (ACMX8W_19255) comFC 3669829..3670551 (-) 723 WP_047183272.1 comF operon protein ComFC Machinery gene
  ACMX8W_RS19260 (ACMX8W_19260) comFB 3670515..3670811 (-) 297 WP_015483764.1 late competence protein ComFB -
  ACMX8W_RS19265 (ACMX8W_19265) comFA 3670871..3672262 (-) 1392 WP_047183273.1 ATP-dependent helicase ComFA Machinery gene
  ACMX8W_RS19270 (ACMX8W_19270) fakBA 3672368..3673213 (-) 846 WP_047183274.1 DegV family protein -
  ACMX8W_RS19275 (ACMX8W_19275) degU 3673311..3674000 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACMX8W_RS19280 (ACMX8W_19280) degS 3674083..3675240 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACMX8W_RS19285 (ACMX8W_19285) yvyE 3675457..3676110 (+) 654 WP_003227979.1 YigZ family protein -
  ACMX8W_RS19290 (ACMX8W_19290) tagV 3676110..3677285 (+) 1176 WP_047183275.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ACMX8W_RS19295 (ACMX8W_19295) tagO 3677358..3678434 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1095907 ACMX8W_RS19275 WP_003219701.1 3673311..3674000(-) (degU) [Bacillus subtilis strain Z-294]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1095907 ACMX8W_RS19275 WP_003219701.1 3673311..3674000(-) (degU) [Bacillus subtilis strain Z-294]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment