Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACMX8W_RS13255 Genome accession   NZ_CP180439
Coordinates   2537214..2538017 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain Z-294     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2532214..2543017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX8W_RS13230 (ACMX8W_13230) glpQB 2533358..2534089 (-) 732 WP_047182859.1 glycerophosphodiester phosphodiesterase -
  ACMX8W_RS13235 (ACMX8W_13235) yqiI 2534162..2534782 (-) 621 WP_080344210.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACMX8W_RS13240 (ACMX8W_13240) - 2534802..2535098 (-) 297 WP_014480225.1 hypothetical protein -
  ACMX8W_RS13245 (ACMX8W_13245) - 2535406..2535558 (+) 153 WP_015384065.1 hypothetical protein -
  ACMX8W_RS13250 (ACMX8W_13250) yqiG 2535631..2536749 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  ACMX8W_RS13255 (ACMX8W_13255) spo0A 2537214..2538017 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACMX8W_RS13260 (ACMX8W_13260) spoIVB 2538293..2539573 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  ACMX8W_RS13265 (ACMX8W_13265) recN 2539748..2541478 (-) 1731 WP_047182861.1 DNA repair protein RecN Machinery gene
  ACMX8W_RS13270 (ACMX8W_13270) argR 2541515..2541964 (-) 450 WP_015384067.1 arginine repressor ArgR -
  ACMX8W_RS13275 (ACMX8W_13275) yqxC 2542062..2542907 (-) 846 WP_015384068.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1095876 ACMX8W_RS13255 WP_003226427.1 2537214..2538017(-) (spo0A) [Bacillus subtilis strain Z-294]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1095876 ACMX8W_RS13255 WP_003226427.1 2537214..2538017(-) (spo0A) [Bacillus subtilis strain Z-294]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATTGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACAGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment