Detailed information    

insolico Bioinformatically predicted

Overview


Name   nin/comJ   Type   Regulator
Locus tag   ACMX8W_RS01945 Genome accession   NZ_CP180439
Coordinates   362229..362627 (-) Length   132 a.a.
NCBI ID   WP_015252845.1    Uniprot ID   -
Organism   Bacillus subtilis strain Z-294     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context


Location: 357229..367627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX8W_RS01910 (ACMX8W_01910) - 357990..358187 (+) 198 WP_144052033.1 hypothetical protein -
  ACMX8W_RS01915 (ACMX8W_01915) yckC 358238..358663 (+) 426 WP_047182064.1 RDD family protein -
  ACMX8W_RS01920 (ACMX8W_01920) yckD 358745..359077 (+) 333 WP_047182065.1 YckD family protein -
  ACMX8W_RS01925 (ACMX8W_01925) - 359189..359611 (+) 423 WP_174616579.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACMX8W_RS01930 (ACMX8W_01930) - 359599..359940 (+) 342 WP_032724911.1 DUF3147 family protein -
  ACMX8W_RS01935 (ACMX8W_01935) - 359959..360687 (+) 729 WP_021481826.1 AAA family ATPase -
  ACMX8W_RS01940 (ACMX8W_01940) bglC 360759..362192 (+) 1434 WP_047182066.1 6-phospho-beta-glucosidase -
  ACMX8W_RS01945 (ACMX8W_01945) nin/comJ 362229..362627 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  ACMX8W_RS01950 (ACMX8W_01950) nucA/comI 362654..363103 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  ACMX8W_RS01955 (ACMX8W_01955) tlpC 363271..364992 (-) 1722 WP_047182067.1 methyl-accepting chemotaxis protein TlpC -
  ACMX8W_RS01960 (ACMX8W_01960) hxlB 365103..365660 (-) 558 WP_047182068.1 6-phospho-3-hexuloisomerase -
  ACMX8W_RS01965 (ACMX8W_01965) hxlA 365666..366298 (-) 633 WP_047182069.1 3-hexulose-6-phosphate synthase -
  ACMX8W_RS01970 (ACMX8W_01970) hxlR 366530..366892 (+) 363 WP_047182070.1 transcriptional activator HxlR -

Sequence


Protein


Download         Length: 132 a.a.        Molecular weight: 14935.86 Da        Isoelectric Point: 4.7078

>NTDB_id=1095844 ACMX8W_RS01945 WP_015252845.1 362229..362627(-) (nin/comJ) [Bacillus subtilis strain Z-294]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYETKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1095844 ACMX8W_RS01945 WP_015252845.1 362229..362627(-) (nin/comJ) [Bacillus subtilis strain Z-294]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCTATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAACAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains


Predicted by InterproScan.

(9-129)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985


Multiple sequence alignment