Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACMX77_RS15315 Genome accession   NZ_CP180438
Coordinates   2880975..2881721 (-) Length   248 a.a.
NCBI ID   WP_080344219.1    Uniprot ID   -
Organism   Bacillus subtilis strain W-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2875975..2886721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS15290 (ACMX77_15290) mreC 2876381..2877253 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACMX77_RS15295 (ACMX77_15295) mreB 2877284..2878297 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACMX77_RS15300 (ACMX77_15300) radC 2878389..2879084 (-) 696 WP_015384272.1 RadC family protein -
  ACMX77_RS15305 (ACMX77_15305) maf 2879121..2879690 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ACMX77_RS15310 (ACMX77_15310) spoIIB 2879843..2880841 (-) 999 WP_047182972.1 stage II sporulation protein SpoIIB -
  ACMX77_RS15315 (ACMX77_15315) comC 2880975..2881721 (-) 747 WP_080344219.1 prepilin peptidase Machinery gene
  ACMX77_RS15320 (ACMX77_15320) folC 2881861..2883153 (-) 1293 WP_015384275.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACMX77_RS15325 (ACMX77_15325) valS 2883213..2885855 (-) 2643 WP_015483523.1 valine--tRNA ligase -
  ACMX77_RS15330 (ACMX77_15330) - 2886303..2886494 (+) 192 WP_047182973.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26403.00 Da        Isoelectric Point: 9.7944

>NTDB_id=1095816 ACMX77_RS15315 WP_080344219.1 2880975..2881721(-) (comC) [Bacillus subtilis strain W-2]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLIQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1095816 ACMX77_RS15315 WP_080344219.1 2880975..2881721(-) (comC) [Bacillus subtilis strain W-2]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTAATTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(100-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984

Multiple sequence alignment