Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACMX77_RS12280 Genome accession   NZ_CP180438
Coordinates   2357196..2357816 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain W-2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2352196..2362816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS12240 (ACMX77_12240) ptsA 2353327..2353833 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  ACMX77_RS12245 (ACMX77_12245) ypqA 2353971..2354390 (+) 420 WP_174616714.1 Hsp20/alpha crystallin family protein -
  ACMX77_RS12250 (ACMX77_12250) sppG 2354411..2354788 (-) 378 WP_015251832.1 YppG family protein -
  ACMX77_RS12255 (ACMX77_12255) yppF 2354976..2355164 (+) 189 WP_003230690.1 YppF family protein -
  ACMX77_RS12260 (ACMX77_12260) yppE 2355203..2355574 (-) 372 WP_003246080.1 YppE family protein -
  ACMX77_RS12265 (ACMX77_12265) yppD 2355620..2355865 (-) 246 WP_047182790.1 DUF5446 family protein -
  ACMX77_RS12270 (ACMX77_12270) sspM 2356064..2356168 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACMX77_RS12275 (ACMX77_12275) yppC 2356193..2357155 (-) 963 WP_015383945.1 DUF2515 domain-containing protein -
  ACMX77_RS12280 (ACMX77_12280) recU 2357196..2357816 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ACMX77_RS12285 (ACMX77_12285) ponA 2357838..2360597 (+) 2760 WP_047182791.1 transglycosylase domain-containing protein -
  ACMX77_RS12290 (ACMX77_12290) ypoC 2360673..2361167 (-) 495 WP_047182792.1 YpoC family protein -
  ACMX77_RS12295 (ACMX77_12295) nth 2361164..2361823 (-) 660 WP_015483371.1 endonuclease III -
  ACMX77_RS12300 (ACMX77_12300) dnaD 2361842..2362540 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1095796 ACMX77_RS12280 WP_004399067.1 2357196..2357816(+) (recU) [Bacillus subtilis strain W-2]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1095796 ACMX77_RS12280 WP_004399067.1 2357196..2357816(+) (recU) [Bacillus subtilis strain W-2]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment