Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACMX77_RS08765 Genome accession   NZ_CP180438
Coordinates   1675098..1675991 (+) Length   297 a.a.
NCBI ID   WP_047182610.1    Uniprot ID   -
Organism   Bacillus subtilis strain W-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1670098..1680991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS08745 (ACMX77_08745) - 1670768..1672498 (+) 1731 WP_047182607.1 hypothetical protein -
  ACMX77_RS08750 (ACMX77_08750) ylqH 1672495..1672776 (+) 282 WP_047182608.1 FlhB-like flagellar biosynthesis protein -
  ACMX77_RS08755 (ACMX77_08755) sucC 1672949..1674106 (+) 1158 WP_014663957.1 ADP-forming succinate--CoA ligase subunit beta -
  ACMX77_RS08760 (ACMX77_08760) sucD 1674135..1675037 (+) 903 WP_047182609.1 succinate--CoA ligase subunit alpha -
  ACMX77_RS08765 (ACMX77_08765) dprA 1675098..1675991 (+) 894 WP_047182610.1 DNA-processing protein DprA Machinery gene
  ACMX77_RS08770 (ACMX77_08770) topA 1676179..1678254 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  ACMX77_RS08775 (ACMX77_08775) trmFO 1678330..1679637 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACMX77_RS08780 (ACMX77_08780) xerC 1679705..1680619 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32934.23 Da        Isoelectric Point: 9.9142

>NTDB_id=1095791 ACMX77_RS08765 WP_047182610.1 1675098..1675991(+) (dprA) [Bacillus subtilis strain W-2]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLTAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGISEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1095791 ACMX77_RS08765 WP_047182610.1 1675098..1675991(+) (dprA) [Bacillus subtilis strain W-2]
TTGGATCAGGCCGCTGCCTGCTTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTACTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGAATAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGGCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.316

100

0.983
  dprA Lactococcus lactis subsp. cremoris KW2

41.353

89.562

0.37

Multiple sequence alignment