Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACMX77_RS05730 Genome accession   NZ_CP180438
Coordinates   1104261..1104839 (+) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis strain W-2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1099261..1109839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS05705 (ACMX77_05705) - 1099772..1100287 (-) 516 WP_396121704.1 methyl-accepting chemotaxis protein -
  ACMX77_RS05710 (ACMX77_05710) - 1100528..1101154 (-) 627 Protein_1058 protoglobin domain-containing protein -
  ACMX77_RS05715 (ACMX77_05715) comW 1101209..1102738 (-) 1530 WP_174616631.1 FAD-dependent oxidoreductase -
  ACMX77_RS05720 (ACMX77_05720) yhxC 1102850..1103707 (+) 858 WP_015483049.1 SDR family oxidoreductase -
  ACMX77_RS05725 (ACMX77_05725) yhzC 1103735..1103968 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ACMX77_RS05730 (ACMX77_05730) comK 1104261..1104839 (+) 579 WP_015483050.1 competence transcription factor ComK Regulator
  ACMX77_RS05735 (ACMX77_05735) yhxD 1104886..1105785 (-) 900 WP_047182383.1 SDR family oxidoreductase -
  ACMX77_RS05740 (ACMX77_05740) yhjA 1106003..1106272 (+) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  ACMX77_RS05745 (ACMX77_05745) yhjB 1106316..1107785 (-) 1470 WP_015383277.1 sodium:solute symporter family protein -
  ACMX77_RS05750 (ACMX77_05750) yhjC 1107782..1107982 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ACMX77_RS05755 (ACMX77_05755) - 1108190..1108552 (-) 363 WP_003233132.1 hypothetical protein -
  ACMX77_RS05760 (ACMX77_05760) yhjE 1108704..1109327 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  ACMX77_RS05765 (ACMX77_05765) lepB 1109329..1109835 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=1095776 ACMX77_RS05730 WP_015483050.1 1104261..1104839(+) (comK) [Bacillus subtilis strain W-2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1095776 ACMX77_RS05730 WP_015483050.1 1104261..1104839(+) (comK) [Bacillus subtilis strain W-2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99

Multiple sequence alignment