Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGHHV_RS07315 Genome accession   NZ_AP031452
Coordinates   1541113..1542966 (+) Length   617 a.a.
NCBI ID   WP_390430944.1    Uniprot ID   -
Organism   Agathobacter rectalis strain k41-0107-C12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536113..1547966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHHV_RS07295 (K410107C12_14140) - 1536337..1536771 (+) 435 WP_390430936.1 hypothetical protein -
  ACGHHV_RS07300 (K410107C12_14150) - 1537270..1538244 (+) 975 WP_390430938.1 Rpn family recombination-promoting nuclease/putative transposase -
  ACGHHV_RS07305 (K410107C12_14160) - 1538470..1538676 (+) 207 WP_390430940.1 hypothetical protein -
  ACGHHV_RS07310 (K410107C12_14170) - 1538880..1541111 (+) 2232 WP_390430942.1 ABC transporter ATP-binding protein -
  ACGHHV_RS07315 (K410107C12_14180) rcrQ 1541113..1542966 (+) 1854 WP_390430944.1 ABC transporter ATP-binding protein Regulator
  ACGHHV_RS07320 - 1543331..1543678 (+) 348 Protein_1406 sporulation initiation factor Spo0A C-terminal domain-containing protein -
  ACGHHV_RS07325 (K410107C12_14200) glgA 1543847..1545298 (+) 1452 WP_173844114.1 glycogen synthase GlgA -
  ACGHHV_RS07330 (K410107C12_14210) - 1545427..1546320 (-) 894 WP_055272810.1 DUF5688 family protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68428.15 Da        Isoelectric Point: 6.6998

>NTDB_id=109562 ACGHHV_RS07315 WP_390430944.1 1541113..1542966(+) (rcrQ) [Agathobacter rectalis strain k41-0107-C12]
MSENNNEQFKMPPKRPRGPMGHGPGMVTEKAKDFKGSTKKLIKYLGRYWAAIIAVMIFAAVSTVFSVAGPKIMGKATTAL
AEGLMNKIAGTGGIDFDYIAKVLLFTLALYVVSAIFMFAQGLIMTGITQKTCYRMRKDITSKINRMPMKYFESRTYGEVL
SRITNDVDTLGQSLNQSITQIITSVATLVGTLVMMLSISPLMTLISLVILPVSMILISFVIKHSQKYFRQQQEYLGHING
QVEEVYGGHLVIKAYNKEAETVKTFKEANNVLYKSAWKSQFLSGLMMPIMQFVGNLGYAGVAISGGILAIKNVITIGDIQ
AFIQYVKNFTQPIQQIAQVANQLQSMAAASERVFEFLEEEEEDITVENPVKPDHIEGSVEFSHVHFGYNPDQIIINDFSA
QVKPGQQVAIVGPTGAGKTTMVKLLMRFYDVSSGAILVDGHDIRDYNRADLRDAFGMVLQDTWLFKGTIMENIRYGRLDA
TDEEVIAAAKAAHAHHFIQTLPGGYDMELNEDASNVSQGQKQLLTIARAILADNPILILDEATSSVDTRTEIRIQKALDN
LMKGRTSFVIAHRLSTIKNADMILVMKDGDIIEQGTHDELLAKNGFYAELYNSQFEE

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=109562 ACGHHV_RS07315 WP_390430944.1 1541113..1542966(+) (rcrQ) [Agathobacter rectalis strain k41-0107-C12]
ATGAGTGAGAATAATAACGAACAGTTCAAGATGCCTCCTAAGAGGCCAAGAGGGCCAATGGGACATGGCCCCGGAATGGT
CACAGAAAAGGCCAAGGATTTCAAGGGCTCTACAAAGAAGCTCATAAAGTATCTCGGCAGATACTGGGCTGCCATCATTG
CAGTTATGATATTTGCAGCAGTTTCGACTGTCTTCTCCGTTGCAGGACCGAAGATCATGGGTAAAGCCACCACTGCGCTT
GCCGAGGGACTCATGAACAAGATTGCAGGAACAGGCGGCATAGATTTTGATTATATTGCAAAGGTTCTTTTGTTTACGCT
GGCTTTATATGTGGTGAGTGCCATCTTTATGTTCGCCCAGGGACTTATCATGACAGGCATCACGCAGAAGACCTGCTACA
GGATGCGTAAGGACATCACGAGCAAAATCAACCGTATGCCGATGAAGTATTTCGAGTCAAGGACATACGGTGAGGTACTT
TCGCGTATCACAAACGATGTGGACACACTTGGACAGAGCTTGAACCAGAGTATTACACAGATTATCACATCTGTTGCCAC
CTTGGTCGGTACACTTGTCATGATGCTGTCTATTTCACCGCTCATGACGCTTATTTCACTCGTTATCCTGCCTGTTTCGA
TGATACTTATTTCGTTTGTCATAAAGCATTCGCAGAAATACTTCAGACAGCAGCAGGAGTATTTAGGACACATAAACGGA
CAGGTCGAGGAGGTGTACGGCGGTCACCTTGTCATAAAGGCATACAATAAAGAGGCTGAGACTGTAAAGACCTTCAAGGA
GGCCAACAATGTGCTCTACAAATCCGCATGGAAATCACAGTTCCTCTCAGGACTTATGATGCCTATCATGCAGTTTGTAG
GAAACTTAGGATACGCGGGAGTTGCCATCTCAGGCGGTATACTTGCCATAAAGAATGTCATCACAATCGGTGATATCCAG
GCATTTATACAGTATGTGAAGAATTTCACACAGCCTATCCAGCAGATAGCACAGGTGGCAAACCAGCTTCAGTCGATGGC
GGCTGCATCTGAGCGTGTATTTGAGTTCCTTGAGGAGGAGGAAGAGGATATAACAGTGGAAAATCCTGTAAAGCCGGACC
ATATCGAGGGAAGTGTAGAGTTTTCGCATGTACACTTTGGTTATAATCCTGACCAGATCATCATCAATGATTTTTCTGCA
CAGGTAAAGCCGGGACAGCAGGTTGCTATCGTTGGACCGACAGGAGCGGGAAAGACTACCATGGTCAAGCTTCTTATGAG
ATTTTATGATGTAAGCTCAGGCGCCATTCTTGTAGACGGACATGATATCAGGGATTACAACAGAGCCGATCTGCGAGATG
CATTCGGCATGGTATTGCAGGACACATGGCTCTTTAAGGGCACCATTATGGAAAATATCCGCTACGGCCGTCTGGATGCA
ACAGATGAGGAGGTCATCGCGGCAGCAAAGGCAGCACATGCGCATCACTTTATCCAGACATTGCCGGGTGGCTACGATAT
GGAGCTCAATGAGGATGCTTCCAATGTGTCACAGGGACAAAAGCAGCTTTTGACAATAGCAAGAGCCATTCTTGCAGACA
ATCCTATCCTGATCCTTGATGAGGCCACATCCTCTGTCGATACACGTACAGAAATCCGTATCCAGAAGGCACTCGACAAT
CTGATGAAGGGCAGAACAAGCTTTGTCATCGCCCACAGGCTGTCTACTATCAAGAATGCCGATATGATTCTTGTCATGAA
GGACGGAGACATTATCGAGCAGGGTACACACGATGAGCTTCTTGCAAAGAACGGATTTTATGCAGAGCTGTATAACTCTC
AGTTTGAAGAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(396-544)

ABC transporter transmembrane region (ABC_membrane)

(52-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.115

94.489

0.483

Multiple sequence alignment