Detailed information NTG0109560

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACGHHV_RS06255
• Genome accession: NZ_AP031452
• Coordinates: 1325323..1326693 (+)
• Length: 456 a.a.
• NCBI ID: WP_015568112.1
• Uniprot ID: -
• Organism: Agathobacter rectalis strain k41-0107-C12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1320323..1331693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGHHV_RS06240 (K410107C12_12060)	-	1320336..1322342 (+)	2007	WP_390430807.1	cadherin-like beta sandwich domain-containing protein	-
ACGHHV_RS06245 (K410107C12_12070)	-	1322348..1324804 (+)	2457	WP_390431013.1	ATP-dependent Clp protease ATP-binding subunit	-
ACGHHV_RS06250 (K410107C12_12080)	-	1324852..1325265 (+)	414	WP_012743134.1	hypothetical protein	-
ACGHHV_RS06255 (K410107C12_12090)	radA	1325323..1326693 (+)	1371	WP_015568112.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 49419.10 Da
• Isoelectric Point: 6.3680

>NTDB_id=109560 ACGHHV_RS06255 WP_015568112.1 1325323..1326693(+) (radA) [Agathobacter rectalis strain k41-0107-C12]
MAKGKTSVFFCQECGYESAKWMGQCPACKEWNTFVEETVDKKSISSSGKVKKESKAAQVLPLSAVKSEKEERIVTGIAEF
DRVLGGGIVRGSLVLVGGDPGIGKSTLLLQVCRELSQKKVPLLYVSGEESLHQIKMRADRLGDFTDSLELLCETSLDIAK
DVIQRKKPEVVVIDSIQTMYNEEIASAPGSVSQVRETTGVLMQLAKTLGISVFIVGHVTKDGAVAGPRTLEHMVDTVLYF
EGDRYESYRILRGVKNRFGSTNEIGVFEMKAEGLVEVENPSEYMLSGKPEGASGSIVTCSIEGSRPILLEIQALVCHSFF
NNPRRTANGTDYNKVNLLMAVLEKRANLSLSDCDAYVNIAGGIRMNEPAIDLGIVLAIASSKKDIIVREDTICFGEVGLS
GEVRGVTMSEQRVAEAKKLGFKKCIVPKVCLAGVSHISGIEIVGVANIKEAIEAVR

Nucleotide

• Length: 1371 bp

>NTDB_id=109560 ACGHHV_RS06255 WP_015568112.1 1325323..1326693(+) (radA) [Agathobacter rectalis strain k41-0107-C12]
ATGGCAAAAGGAAAGACCTCTGTATTTTTCTGCCAGGAATGTGGTTATGAATCGGCAAAATGGATGGGACAGTGCCCGGC
CTGTAAGGAATGGAATACATTTGTAGAGGAAACCGTAGATAAAAAGTCGATAAGCTCGTCGGGAAAAGTAAAAAAAGAAT
CAAAGGCGGCACAGGTTCTGCCTCTTTCGGCAGTAAAAAGCGAGAAAGAGGAGCGTATAGTGACAGGTATAGCCGAGTTT
GACAGAGTGCTTGGTGGAGGAATTGTGAGGGGGTCACTTGTGCTTGTGGGAGGAGATCCGGGTATAGGAAAATCCACGCT
TCTACTTCAGGTATGCAGGGAACTTTCACAAAAAAAGGTGCCATTACTTTATGTGTCAGGTGAGGAATCCCTGCATCAGA
TAAAGATGCGTGCCGACAGACTTGGTGATTTTACGGATTCACTGGAGCTTTTATGTGAGACAAGTCTTGATATAGCAAAG
GACGTGATTCAACGAAAAAAACCGGAGGTTGTTGTAATAGATTCCATCCAGACTATGTACAATGAGGAGATAGCGTCGGC
ACCGGGCAGTGTCTCACAGGTCAGGGAGACAACCGGAGTGCTTATGCAGCTTGCAAAGACTCTGGGTATTTCTGTTTTTA
TAGTAGGACATGTGACGAAGGATGGTGCGGTTGCGGGGCCGAGGACGTTAGAGCATATGGTTGATACTGTGCTTTATTTT
GAGGGTGACAGGTATGAGTCGTACAGGATACTTAGAGGCGTTAAGAACAGATTTGGTTCGACCAATGAGATAGGCGTATT
TGAAATGAAGGCGGAGGGACTTGTTGAGGTGGAAAATCCGTCGGAGTATATGCTTAGCGGTAAGCCCGAGGGAGCATCAG
GATCAATTGTCACATGTTCCATAGAGGGAAGCCGCCCGATACTTCTCGAGATACAGGCTCTTGTATGTCACAGTTTTTTT
AATAATCCAAGGCGTACAGCAAATGGTACAGATTATAATAAAGTAAATCTACTCATGGCGGTCCTTGAAAAAAGAGCCAA
CCTGTCACTGTCAGACTGTGACGCTTATGTGAATATAGCAGGCGGTATAAGGATGAACGAACCCGCGATAGACCTTGGGA
TAGTGCTTGCAATCGCATCAAGCAAAAAGGATATTATAGTGCGTGAGGATACCATATGCTTTGGAGAGGTAGGCTTAAGC
GGAGAGGTACGCGGAGTTACCATGTCCGAGCAGCGTGTGGCTGAGGCAAAGAAGCTTGGCTTTAAAAAGTGTATTGTTCC
CAAAGTGTGTCTTGCAGGAGTGTCGCATATTAGTGGAATTGAGATTGTCGGTGTGGCAAATATCAAGGAAGCGATAGAGG
CTGTCAGATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (348-428)

• AAA domain (AAA_25) (71-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	57.174	99.342	0.568
radA	Streptococcus mitis NCTC 12261	52.941	100	0.533
radA	Streptococcus mitis SK321	52.941	100	0.533
radA	Streptococcus pneumoniae Rx1	52.941	100	0.533
radA	Streptococcus pneumoniae D39	52.941	100	0.533
radA	Streptococcus pneumoniae R6	52.941	100	0.533
radA	Streptococcus pneumoniae TIGR4	52.941	100	0.533