Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACMVP2_RS10005 Genome accession   NZ_CP180355
Coordinates   2267760..2269133 (-) Length   457 a.a.
NCBI ID   WP_339785581.1    Uniprot ID   -
Organism   MAG: Imperialibacter sp. isolate tig00000051     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2262760..2274133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVP2_RS09985 (ACMVP2_09985) - 2263035..2263940 (+) 906 WP_416867592.1 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase -
  ACMVP2_RS09990 (ACMVP2_09990) - 2264008..2265636 (+) 1629 WP_339785575.1 hypothetical protein -
  ACMVP2_RS09995 (ACMVP2_09995) - 2265633..2267138 (+) 1506 WP_416867593.1 DUF5723 family protein -
  ACMVP2_RS10000 (ACMVP2_10000) - 2267142..2267747 (-) 606 WP_152001585.1 DUF2179 domain-containing protein -
  ACMVP2_RS10005 (ACMVP2_10005) radA 2267760..2269133 (-) 1374 WP_339785581.1 DNA repair protein RadA Machinery gene
  ACMVP2_RS10010 (ACMVP2_10010) - 2269169..2269609 (-) 441 WP_416867594.1 SRPBCC family protein -
  ACMVP2_RS10015 (ACMVP2_10015) - 2269750..2270133 (+) 384 WP_339785586.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49752.34 Da        Isoelectric Point: 6.3733

>NTDB_id=1095437 ACMVP2_RS10005 WP_339785581.1 2267760..2269133(-) (radA) [MAG: Imperialibacter sp. isolate tig00000051]
MAKVKSAFFCQNCGAQSPKWTGKCPSCGEWNTYVEEVIEKEHASSPSWKKASGPARASKPQAIDQVESVAMQRIKTADEE
LNRVLGGGIVPGSLVLIGGEPGIGKSTLLLQIALQLPNLKVLYVSGEESEQQIKMRAERIGIKNNNCFVLSEVGIANVFR
QIEELEPQLLVIDSIQTLYSDKVESAAGSISQIRECTAELMKFAKETNTPVFLIGHINKEGAIAGPKVLEHMVDTVLQFE
GDRHLVYRILRTTKNRFGAASELGIYEMQGEGLREVKNPSEILISQKDGDVSGVAIAATLEGNRPLLIEIQSLVSPATYG
NPQRTSTGFDNKRLSMLLAVLEKRGGFRLGTQDVFLNVAGGLKLDDPAADLAICMAMISSLEEIPVSSKVCFAAEVGLGG
EIRAVNRIDGRIMEAEKLGFEAIYVSKFAQRAIEGKKFKIAVRQFGRIHEVISDLFG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1095437 ACMVP2_RS10005 WP_339785581.1 2267760..2269133(-) (radA) [MAG: Imperialibacter sp. isolate tig00000051]
GTGGCCAAAGTAAAATCAGCTTTTTTTTGTCAGAATTGTGGTGCGCAATCACCGAAGTGGACTGGTAAATGCCCCTCTTG
CGGGGAGTGGAACACCTACGTTGAAGAGGTAATAGAAAAGGAGCATGCTTCGTCTCCATCGTGGAAAAAAGCCAGCGGCC
CTGCCCGTGCCTCTAAGCCTCAGGCGATTGATCAGGTGGAGTCCGTGGCCATGCAGCGGATCAAAACTGCTGATGAAGAG
CTCAACAGGGTGCTGGGAGGAGGCATTGTTCCGGGAAGCCTGGTGCTGATTGGCGGAGAACCGGGCATCGGCAAGTCGAC
GCTGCTGCTGCAAATTGCGCTACAGCTACCCAACCTAAAGGTGCTGTACGTTTCGGGCGAGGAAAGTGAGCAGCAGATCA
AAATGCGGGCGGAGCGAATTGGCATCAAAAACAACAATTGTTTTGTGCTGTCTGAGGTAGGCATTGCCAATGTGTTCAGA
CAAATAGAAGAGCTGGAACCCCAGCTTTTGGTCATCGATTCCATCCAAACGCTTTACTCCGATAAGGTAGAATCAGCGGC
TGGCAGTATTTCTCAGATAAGGGAATGCACAGCAGAACTGATGAAGTTCGCCAAAGAAACCAACACCCCCGTGTTTCTCA
TTGGCCACATTAACAAAGAGGGCGCTATTGCCGGCCCAAAAGTGTTGGAGCACATGGTTGACACGGTGCTACAGTTCGAA
GGGGACAGGCATCTGGTTTACCGCATTTTGCGCACAACGAAAAACCGCTTCGGCGCAGCCTCCGAGCTTGGCATTTACGA
AATGCAGGGAGAAGGCCTCAGAGAGGTAAAAAACCCATCCGAAATCCTTATTTCGCAAAAAGATGGGGATGTGAGTGGCG
TGGCAATTGCCGCTACACTGGAAGGTAACCGCCCTTTGCTTATTGAAATACAGAGTTTGGTAAGCCCGGCCACCTACGGC
AATCCGCAAAGAACATCTACCGGTTTCGACAACAAGAGGTTAAGCATGCTGCTGGCGGTGCTCGAGAAGAGAGGAGGCTT
CAGGCTTGGGACGCAAGACGTTTTCCTGAATGTTGCCGGAGGCTTGAAGCTGGATGATCCGGCAGCGGATTTGGCCATCT
GCATGGCAATGATTTCTTCTCTGGAAGAAATCCCTGTGTCCTCAAAAGTATGCTTTGCTGCAGAAGTCGGTTTGGGTGGT
GAGATCAGAGCAGTGAACAGAATTGATGGGAGGATCATGGAAGCCGAAAAGCTGGGCTTTGAAGCCATTTATGTTTCTAA
GTTTGCGCAACGGGCAATAGAGGGAAAGAAGTTTAAAATAGCCGTCAGACAGTTTGGAAGAATCCACGAGGTGATTTCCG
ATTTGTTTGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(66-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

51.204

100

0.512
  radA Streptococcus mitis NCTC 12261

51.204

100

0.512
  radA Streptococcus pneumoniae Rx1

51.204

100

0.512
  radA Streptococcus pneumoniae R6

51.204

100

0.512
  radA Streptococcus pneumoniae TIGR4

51.204

100

0.512
  radA Streptococcus mitis SK321

50.985

100

0.51
  radA Bacillus subtilis subsp. subtilis str. 168

54.186

94.092

0.51

Multiple sequence alignment