Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACMVYQ_RS12125 Genome accession   NZ_CP180345
Coordinates   2392930..2394297 (-) Length   455 a.a.
NCBI ID   WP_002433170.1    Uniprot ID   -
Organism   Staphylococcus capitis strain YSMAA1_1_H3st     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2387930..2399297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYQ_RS12110 (ACMVYQ_12110) cysE 2388792..2389421 (-) 630 WP_171002259.1 serine O-acetyltransferase -
  ACMVYQ_RS12115 (ACMVYQ_12115) gltX 2389844..2391298 (-) 1455 WP_002433261.1 glutamate--tRNA ligase -
  ACMVYQ_RS12120 (ACMVYQ_12120) - 2391708..2392772 (-) 1065 WP_161799216.1 PIN/TRAM domain-containing protein -
  ACMVYQ_RS12125 (ACMVYQ_12125) radA 2392930..2394297 (-) 1368 WP_002433170.1 DNA repair protein RadA Machinery gene
  ACMVYQ_RS12130 (ACMVYQ_12130) - 2394640..2397093 (-) 2454 WP_002452472.1 ATP-dependent Clp protease ATP-binding subunit -
  ACMVYQ_RS12135 (ACMVYQ_12135) - 2397108..2398112 (-) 1005 WP_002433454.1 protein arginine kinase -
  ACMVYQ_RS12140 (ACMVYQ_12140) - 2398105..2398668 (-) 564 WP_002433344.1 UvrB/UvrC motif-containing protein -
  ACMVYQ_RS12145 (ACMVYQ_12145) - 2398688..2399149 (-) 462 WP_002433457.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49875.30 Da        Isoelectric Point: 6.8755

>NTDB_id=1095391 ACMVYQ_RS12125 WP_002433170.1 2392930..2394297(-) (radA) [Staphylococcus capitis strain YSMAA1_1_H3st]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKEAAGKVQKLDNVKHESTPRILTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSQLNVLAETDLEVIHQTVK
DERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMDIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIQVIGVSSVHEALKYALHSS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1095391 ACMVYQ_RS12125 WP_002433170.1 2392930..2394297(-) (radA) [Staphylococcus capitis strain YSMAA1_1_H3st]
GTGGCCAAGAAAAAAGTAATATTTGAGTGTATGGCATGTGGCTATCAATCTCCTAAATGGATGGGGAAATGTCCAAACTG
TGGTGCATGGAACCAGATGGAAGAAATTGTAGAGAAAGCTGCAAACCCTAAACATGGAGTAAAATCTAAAGAAGCGGCAG
GAAAAGTTCAAAAATTGGATAATGTTAAACATGAATCTACCCCTAGAATTCTAACGGATTCTAAAGAATTTAACAGAGTC
CTTGGTGGAGGGATTGTCAGTGGATCACTCGTACTTATAGGTGGCGATCCTGGTATAGGGAAGTCTACGTTGCTTCTTCA
AATATGTGCGGCATTATCTCAAAATAAGAATGTCTTATATATTACAGGTGAGGAATCTATCAATCAGACTAAACTACGTG
CCGACCGCTTAGAAGAAGATTCTAGTCAACTCAATGTATTAGCAGAGACTGATTTAGAAGTCATTCATCAAACAGTTAAG
GATGAACGACCAGATTTACTTGTAGTAGATTCAATACAAACTATTTATCATCCTGAAATCAGTTCTGCACCGGGTTCTGT
ATCTCAAGTAAGAGAAAGTACTCAAAGTCTAATGAATATCGCAAAGCAAATGGATATCGCAACGTTCATCGTCGGTCATG
TTACGAAAGAAGGACAAATTGCCGGTCCAAGATTACTTGAACATATGGTGGATACCGTGCTTTACTTTGAAGGTGATGAA
CATCATGCTTATCGAATTTTACGTGCGGTTAAAAACCGTTTTGGCTCCACGAATGAGATGGGTATTTTCGAAATGAAGCA
AAGTGGTTTGAAAGGTGTCTTAAATCCGTCTGAAATGTTCTTAGAAGAACGTTCTACAAACGTGCCAGGTTCAACAATTG
TACCGACTATGGAAGGTACAAGACCACTATTAATAGAGGTCCAAGCGTTAGTCACACCGACCACTTTCAACAATCCAAGA
CGTATGGCTACGGGCATAGATCATAATCGATTAAGTTTGCTTATGGCAGTTTTAGAGAAGAAGGAGAATTATTTACTTCA
ACAACAAGATGCTTATATCAAAGTTGCTGGTGGTGTGAAATTAACAGAACCAGCCGTTGACTTAAGTATTATTGTTGCGA
CAGCTTCAAGCTTTAAGGATAAAGCGGTAGACGGTTTAGATTGCTTTGTTGGAGAGGTTGGCCTAACAGGTGAAGTTCGA
CGTGTGTCACGCATTGAACAACGCGTGCAAGAGGCGGCTAAACTTGGATTCAAACGAGCGATTATACCTCAAACTAATAT
TGGTGGGTGGACTTTCCCGGAAGGTATTCAAGTCATAGGAGTGTCTTCTGTGCATGAGGCTTTAAAATATGCGCTTCATT
CTTCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-218)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.447

100

0.666
  radA Streptococcus pneumoniae Rx1

61.024

98.681

0.602
  radA Streptococcus pneumoniae D39

61.024

98.681

0.602
  radA Streptococcus pneumoniae R6

61.024

98.681

0.602
  radA Streptococcus pneumoniae TIGR4

61.024

98.681

0.602
  radA Streptococcus mitis NCTC 12261

61.024

98.681

0.602
  radA Streptococcus mitis SK321

61.024

98.681

0.602

Multiple sequence alignment