Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   ACMVYQ_RS05295 Genome accession   NZ_CP180345
Coordinates   1045023..1046069 (+) Length   348 a.a.
NCBI ID   WP_002435929.1    Uniprot ID   A0A0S4MEI3
Organism   Staphylococcus capitis strain YSMAA1_1_H3st     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1040023..1051069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYQ_RS05265 (ACMVYQ_05265) - 1040278..1041003 (+) 726 WP_002453605.1 type 1 glutamine amidotransferase -
  ACMVYQ_RS05270 (ACMVYQ_05270) isaB 1041235..1041777 (+) 543 WP_002453604.1 immunodominant staphylococcal antigen IsaB family protein -
  ACMVYQ_RS05275 (ACMVYQ_05275) - 1041860..1042849 (-) 990 WP_049389121.1 FUSC family protein -
  ACMVYQ_RS05280 (ACMVYQ_05280) map 1043024..1043779 (+) 756 WP_002453602.1 type I methionyl aminopeptidase -
  ACMVYQ_RS05285 (ACMVYQ_05285) - 1043924..1044310 (+) 387 WP_002453601.1 hypothetical protein -
  ACMVYQ_RS05290 (ACMVYQ_05290) liaF 1044325..1045026 (+) 702 WP_002453600.1 cell wall-active antibiotics response protein LiaF -
  ACMVYQ_RS05295 (ACMVYQ_05295) vraS 1045023..1046069 (+) 1047 WP_002435929.1 sensor histidine kinase Regulator
  ACMVYQ_RS05300 (ACMVYQ_05300) vraR 1046059..1046688 (+) 630 WP_002453599.1 two-component system response regulator VraR Regulator
  ACMVYQ_RS05305 (ACMVYQ_05305) - 1046754..1048007 (-) 1254 WP_016898704.1 YihY/virulence factor BrkB family protein -
  ACMVYQ_RS05310 (ACMVYQ_05310) - 1048344..1048628 (-) 285 WP_002435890.1 hypothetical protein -
  ACMVYQ_RS05315 (ACMVYQ_05315) - 1048635..1049099 (-) 465 WP_002435947.1 low molecular weight protein-tyrosine-phosphatase -
  ACMVYQ_RS05320 (ACMVYQ_05320) - 1049240..1049446 (+) 207 WP_002435959.1 DUF1128 domain-containing protein -
  ACMVYQ_RS05325 (ACMVYQ_05325) - 1049460..1050701 (+) 1242 WP_002453597.1 aminopeptidase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40136.57 Da        Isoelectric Point: 6.0600

>NTDB_id=1095369 ACMVYQ_RS05295 WP_002435929.1 1045023..1046069(+) (vraS) [Staphylococcus capitis strain YSMAA1_1_H3st]
MNHYLRAIGSMLILVYSMLTAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNILIILLCIIVGSVLAYKINQQNDWLKS
QIERSIEGETVGINDQNLELYSETLEIYHTLVPLNQELHRLRMKTQNMTNENYNMNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESKLEPPLDQQIPVLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVIDLQKKVPMKVVHEI
QDFKVPKGIEDHLFRITQEAISNTLRHSNGSKVTVELFNKEDYLLLRIQDNGKGFNVDEKFEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEDESNGD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1095369 ACMVYQ_RS05295 WP_002435929.1 1045023..1046069(+) (vraS) [Staphylococcus capitis strain YSMAA1_1_H3st]
ATGAATCACTACTTGAGAGCAATTGGTTCAATGCTAATACTTGTATATAGCATGCTAACTGCTTTTTTATTCATTGATAA
GGTGTTCGTCAATATTATTTATTTTCAAGGGATGTTTTACACCCAAATTTTTGGAATACCAGTATTTTTATTCCTAAATA
TATTAATCATCTTACTATGTATTATCGTTGGCTCTGTGTTAGCGTATAAAATCAATCAACAAAATGATTGGCTTAAGTCA
CAAATTGAAAGGTCTATTGAAGGTGAAACAGTAGGCATAAATGATCAAAACCTAGAGTTATACAGTGAAACGTTAGAAAT
TTACCATACTTTAGTTCCTTTAAATCAAGAATTACACCGATTGAGAATGAAAACGCAGAATATGACCAATGAAAATTATA
ATATGAATGATGTAAAAGTGAAGAAAATTATTGAAGACGAACGTCAACGTTTAGCAAGAGAACTACATGACTCAGTTAGT
CAGCAACTATTTGCAGCAAGTATGATGTTGTCAGCGATTAAAGAGTCAAAATTAGAACCACCTTTAGACCAACAAATACC
TGTACTAGAGAAGATGGTTCAAGACTCTCAGCTCGAAATGAGAGCATTATTATTACATCTAAGACCTATTGGTTTGAAAG
ACAAATCATTAGGAGAGGGTATTAAAGATTTAGTCATTGATCTTCAAAAGAAAGTCCCTATGAAAGTTGTTCATGAAATT
CAAGATTTCAAAGTACCAAAAGGGATAGAAGATCATCTGTTTAGAATCACTCAAGAGGCTATTTCTAATACATTACGACA
CTCTAATGGTTCTAAGGTAACAGTTGAATTATTTAATAAAGAAGATTATTTACTACTTAGAATTCAAGATAATGGTAAAG
GTTTTAATGTAGATGAAAAATTTGAACAGAGTTATGGATTAAAAAATATGAGAGAACGTGCTTTAGAGATTGGTGCCACA
TTCCATATCGTATCGTTACCGGATTCAGGTACGAGAATAGAAGTTAAAGCACCATTGAATAAGGAGGATGAATCAAATGG
CGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0S4MEI3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

93.586

98.563

0.922


Multiple sequence alignment