Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACMVYO_RS08725 Genome accession   NZ_CP180296
Coordinates   1749258..1750631 (+) Length   457 a.a.
NCBI ID   WP_017175304.1    Uniprot ID   A0A8I1BGM1
Organism   Staphylococcus hominis strain YSMAS1_1_D4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1744258..1755631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYO_RS08705 (ACMVYO_08705) - 1744581..1745042 (+) 462 WP_002449017.1 CtsR family transcriptional regulator -
  ACMVYO_RS08710 (ACMVYO_08710) - 1745074..1745637 (+) 564 WP_017175301.1 UvrB/UvrC motif-containing protein -
  ACMVYO_RS08715 (ACMVYO_08715) - 1745630..1746637 (+) 1008 WP_049382357.1 protein arginine kinase -
  ACMVYO_RS08720 (ACMVYO_08720) - 1746653..1749124 (+) 2472 WP_017175303.1 ATP-dependent Clp protease ATP-binding subunit -
  ACMVYO_RS08725 (ACMVYO_08725) radA 1749258..1750631 (+) 1374 WP_017175304.1 DNA repair protein RadA Machinery gene
  ACMVYO_RS08730 (ACMVYO_08730) - 1750654..1751727 (+) 1074 WP_017175305.1 PIN/TRAM domain-containing protein -
  ACMVYO_RS08735 (ACMVYO_08735) gltX 1752005..1753459 (+) 1455 WP_049382349.1 glutamate--tRNA ligase -
  ACMVYO_RS08740 (ACMVYO_08740) cysE 1753846..1754475 (+) 630 WP_170999993.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50309.62 Da        Isoelectric Point: 7.0048

>NTDB_id=1095133 ACMVYO_RS08725 WP_017175304.1 1749258..1750631(+) (radA) [Staphylococcus hominis strain YSMAS1_1_D4]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKTSNPKHGVKAKETQAKVQKLNSIKHEATPRVQTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEVIHQTVE
QERPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQSLVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEGVQVVGVTTVHDALTYAFSNRSS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1095133 ACMVYO_RS08725 WP_017175304.1 1749258..1750631(+) (radA) [Staphylococcus hominis strain YSMAS1_1_D4]
TTGGCCAAGAAAAAAGTAATTTTCGAATGTATGGCTTGTGGATATCAGTCTCCTAAATGGATGGGAAAATGTCCGAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTATTGAAAAGACTTCCAATCCAAAGCATGGCGTAAAGGCAAAAGAGACACAAG
CAAAAGTACAGAAATTAAATAGTATTAAGCATGAGGCAACACCGAGAGTTCAAACGGACTCTAAAGAATTTAATCGTGTA
CTTGGTGGCGGAATTGTTAGTGGATCACTCGTACTGATTGGCGGCGACCCGGGTATTGGGAAATCTACATTATTATTACA
GATTTGTGCATCGTTATCACAGAAACTTAATGTACTTTATATCACGGGTGAAGAATCACTAAATCAAACGAAATTGCGTG
CAGATCGTTTAGAGGAAGACTCTAGTAATTTAAATGTACTAGCTGAAACAGATTTAGAAGTTATTCATCAAACCGTGGAA
CAAGAGCGCCCAGATATACTTGTTGTCGATTCAATTCAAACGATTTATCATCCTGAGATTAGTTCAGCACCTGGCTCAGT
ATCACAAGTTCGAGAAAGTACACAAAGTTTAATGAATATTGCAAAACAAATGAATATCGCAACTTTTATAGTAGGTCACG
TAACAAAAGAAGGACAAATTGCTGGTCCAAGATTATTAGAACATATGGTAGATACAGTTTTATACTTCGAAGGTGATGAA
CACCATGCTTATCGAATTTTAAGAGCAGTTAAAAATCGTTTTGGTTCAACGAATGAAATGGGTATTTTTGAAATGAAACA
AAGTGGTTTGAAAGGGGTACAAAACCCTTCAGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCAGGATCAACAATTG
TGGCTACTATGGAAGGCACACGACCACTATTGATTGAGGTGCAATCTCTAGTAACACCTACTACATTTAATAATCCAAGA
CGAATGGCCACAGGCATCGACCACAATCGACTTAGCTTACTTATGGCTGTTTTAGAGAAAAAAGAAAATTATCTTTTACA
ACAACAAGATGCTTACATTAAAGTAGCGGGTGGAGTGAGACTTACTGAACCGGCTGTAGATTTAAGTATTATTGTAGCGA
CTGCTTCAAGTTTTAAAGATAAAGCTGTAGATGGTTTGGATTGTTATATTGGTGAAGTGGGATTAACTGGTGAGGTAAGA
CGAGTATCGCGTATCGAGCAACGTGTACAAGAAGCGGCAAAACTAGGATTTAAGAGAGTGATTATTCCCCAAACGAATAT
AGGTGGATGGACATTCCCAGAAGGTGTTCAGGTCGTTGGTGTGACAACGGTACATGATGCCTTAACATATGCGTTTAGTA
ATCGCTCATCATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(355-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.929

98.906

0.652
  radA Streptococcus pneumoniae Rx1

58.94

99.125

0.584
  radA Streptococcus pneumoniae D39

58.94

99.125

0.584
  radA Streptococcus pneumoniae R6

58.94

99.125

0.584
  radA Streptococcus pneumoniae TIGR4

58.94

99.125

0.584
  radA Streptococcus mitis NCTC 12261

58.94

99.125

0.584
  radA Streptococcus mitis SK321

58.94

99.125

0.584

Multiple sequence alignment